In the realm of biomolecules, peptides can present a large diversity of structures. Our study sheds new light on the structural interplay between a tris-dipicolinate lanthanide probe and a decapeptide SASYKTLPRG. Although a rather trivial, electrostatically driven interaction was expected, the combination of paramagnetic NMR and molecular dynamics simulations reveals a highly dynamic association process and allows for providing extensive insights into the interaction sites and their occupancy. This study highlights the importance of a large conformational sampling to reconcile characteristic time in NMR with molecular dynamics simulations, where sampling in the microsecond range is needed. This study opens the door for a detailed mechanistic elucidation of the early steps of lanthanide complex-peptide or lanthanide complex-protein interaction or self-assembly processes.

Download full-text PDF

Source
http://dx.doi.org/10.1039/d0cp06570fDOI Listing

Publication Analysis

Top Keywords

nmr molecular
12
molecular dynamics
12
dynamic association
8
tris-dipicolinate lanthanide
8
paramagnetic nmr
8
dynamics simulations
8
capturing dynamic
4
association tris-dipicolinate
4
lanthanide
4
lanthanide complex
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!