Structural modeling of a novel membrane-bound globin-coupled sensor in .

Comput Struct Biotechnol J

Proteinchemistry, Proteomics and Epigenetic Signalling, Department of Biomedical Sciences, University of Antwerp, Universiteitsplein 1, 2610 Wilrijk, Belgium.

Published: March 2021

Globin-coupled sensors (GCS) usually consist of three domains: a sensor/globin, a linker, and a transmitter domain. The globin domain (GD), activated by ligand binding and/or redox change, induces an intramolecular signal transduction resulting in a response of the transmitter domain. Depending on the nature of the transmitter domain, GCSs can have different activities and functions, including adenylate and di-guanylate cyclase, histidine kinase activity, aerotaxis and/or oxygen sensing function. The gram-negative delta-proteobacterium expresses a protein with a GD covalently linked to a four transmembrane domain, classified, by sequence similarity, as GCS (GCS). While its GD is fully characterized, not so its transmembrane domain, which is rarely found in the globin superfamily. In the present work, GCS was characterized spectroscopically and by native ion mobility-mass spectrometry in combination with cryo-electron microscopy. Although lacking high resolution, the oligomeric state and the electron density map were valuable for further rational modeling of the full-length GCS structure. This model demonstrates that GCS forms a transmembrane domain-driven tetramer with minimal contact between the GDs and with the heme groups oriented outward. This organization makes an intramolecular signal transduction less likely. Our results, including the auto-oxidation rate and redox potential, suggest a potential role for GCS as redox sensor or in a membrane-bound e/H transfer. As such, GCS might act as a player in connecting energy production to the oxidation of organic compounds and metal reduction. Database searches indicate that GDs linked to a four or seven helices transmembrane domain occur more frequently than expected.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8076648PMC
http://dx.doi.org/10.1016/j.csbj.2021.03.031DOI Listing

Publication Analysis

Top Keywords

transmitter domain
12
transmembrane domain
12
gcs
8
intramolecular signal
8
signal transduction
8
domain
7
structural modeling
4
modeling novel
4
novel membrane-bound
4
membrane-bound globin-coupled
4

Similar Publications

Since visible light communication (VLC) uses light-emitting diode (LED) as transmitters, it has dual functions of illumination and communication. To meet flexible lighting and energy-saving needs, we propose a novel, to the best of our knowledge, dimming control scheme for spectrally efficient clipping-free multilayer optical orthogonal frequency division multiplexing (CFMO-OFDM)-based VLC systems. In order to achieve high dynamic-range dimming control for LEDs, the time-domain CFMO-OFDM signals are first grouped based on frequency-domain subcarrier distribution.

View Article and Find Full Text PDF

A novel, to the best of our knowledge, frequency offset estimation (FOE) scheme is proposed and demonstrated for coherent digital subcarrier multiplexing (DSCM) systems, where frequency offset (FO) leads to severe filtering damage of subcarriers due to bandwidth limitations. The scheme exploits the symmetry of the signal spectrum, which naturally arises from the transmitter's frequency response and introduces frequency skewness as a cost function to search for FO. To achieve fast FOE, the false position (FP) method is employed to iteratively compute frequency shifts.

View Article and Find Full Text PDF

The biosynthesis of cyclic 3',5'-adenosine monophosphate (cAMP) by mammalian membrane-bound adenylyl cyclases (mACs) is predominantly regulated by G-protein-coupled receptors (GPCRs). Up to now the two hexahelical transmembrane domains of mACs were considered to fix the enzyme to membranes. Here, we show that the transmembrane domains serve in addition as signal receptors and transmitters of lipid signals that control Gsα-stimulated mAC activities.

View Article and Find Full Text PDF
Article Synopsis
  • This paper examines how well a 100 Gb/s coherent passive optical network (PON) can handle laser phase noise using distributed feedback (DFB) lasers as local oscillators.
  • The study employs digitally subcarrier-multiplexed (DSCM) signals generated with Alamouti encoding, showing strong performance with power budgets of 34.2 dB and 33.9 dB over a 25 km fiber link, depending on the type of laser used.
  • Advanced digital signal processing techniques are utilized for phase noise compensation and frequency offset estimation, highlighting the importance of low-pass filter settings and pre-equalization for optimal system performance.
View Article and Find Full Text PDF

In this paper, we report a three-dimensional synthetic aperture imaging method with pulsed terahertz waves realized by a terahertz time-domain spectrometer. In contrast to synthetic aperture imaging systems operating at microwave or millimeter-wave frequencies where the frequency of the transmitter is scanned in the frequency domain, in our imaging system, all the frequency components are contained in a single terahertz pulse that can be generated and detected by photoconductive antennas. The image algorithm was analyzed theoretically and confirmed numerically using the finite-difference time-domain method.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!