A PHP Error was encountered

Severity: Warning

Message: file_get_contents(https://...@pubfacts.com&api_key=b8daa3ad693db53b1410957c26c9a51b4908&a=1): Failed to open stream: HTTP request failed! HTTP/1.1 429 Too Many Requests

Filename: helpers/my_audit_helper.php

Line Number: 176

Backtrace:

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 176
Function: file_get_contents

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 250
Function: simplexml_load_file_from_url

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 3122
Function: getPubMedXML

File: /var/www/html/application/controllers/Detail.php
Line: 575
Function: pubMedSearch_Global

File: /var/www/html/application/controllers/Detail.php
Line: 489
Function: pubMedGetRelatedKeyword

File: /var/www/html/index.php
Line: 316
Function: require_once

The SoftWipe tool and benchmark for assessing coding standards adherence of scientific software. | LitMetric

AI Article Synopsis

  • Scientific software is crucial for gaining new insights in research, but its coding standards are often not evaluated.
  • Poor coding practices can result in incorrect scientific outcomes, highlighting the importance of assessment.
  • To address this, SoftWipe is an open-source tool that ranks 48 computational tools based on coding standards adherence, aiding in software review and selection.

Article Abstract

Scientific software from all areas of scientific research is pivotal to obtaining novel insights. Yet the coding standards adherence of scientific software is rarely assessed, even though it might lead to incorrect scientific results in the worst case. Therefore, we have developed an open source tool and benchmark called SoftWipe, that provides a relative software coding standards adherence ranking of 48 computational tools from diverse research areas. SoftWipe can be used in the review process of software papers and to inform the scientific software selection process.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8113446PMC
http://dx.doi.org/10.1038/s41598-021-89495-8DOI Listing

Publication Analysis

Top Keywords

scientific software
16
coding standards
12
standards adherence
12
tool benchmark
8
adherence scientific
8
scientific
6
software
6
softwipe tool
4
benchmark assessing
4
assessing coding
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!