The Whole Genome Sequence of Strain YP04, a Pathogen that Causes Root Rot of American Ginseng.

was previously reported as a plant pathogen or an endophyte that is closely related to , a notoriously significant soilborne phytopathogen. Subsequent studies demonstrated the unique nature of , which was considered a distinct species that causes multiple symptoms on multiple hosts. It was recently identified as a pathogen that causes root rot of American ginseng. Currently, few high-quality genome sequences exist in the public database. Here, we report the whole-genome sequence of strain YP04, based on a hybrid assembly of long- and short-read sequencing with PacBio and Illumina platforms, respectively. The assembly consists of 40 configs with a total length of 52.8 Mb nuclear genomic DNA and 49.6 kb complete mitochondrial genomic DNA, and encodes a total of 18,985 genes, including 18,517 protein-coding genes and 469 RNA genes which were functionally annotated. In total, 4,606 proteins were identified in the pathogen-host interactions database, suggesting that they were likely involved in pathogenicity and host-pathogen interactions, while 41 secondary metabolite synthesis clusters were predicted and annotated. This is the first high-quality whole genome of , providing an important community resource for genome evolution, host-pathogen interaction, and secondary metabolite biosynthesis studies.