Photophysics of thiazole orange in deep eutectic solvents.

Spectrochim Acta A Mol Biomol Spectrosc

Department of Chemistry, Indian Institute of Technology Patna, Patna 801103, Bihar, India. Electronic address:

Published: September 2021

Photophysics and torsional dynamics of thiazole orange (TO) as a function of temperature have been studied in two deep eutectic solvents (DESs) using spectroscopic techniques. Two DESs are used as a solvent namely DES-I (choline chloride + urea, mole ratio 1: 2) and DES-II (N,N diethyl ethanol ammonium chloride + urea, mole ratio 1: 2). We explore the influence of DESs on the photophysical properties of TO. The fluorescence quantum yield and fluorescence lifetime of TO decreases with increasing temperature due to thermal deactivation. At higher temperature, fluorescence quantum yield of TO decreases in DESs may be due to the molecular rotor nature of TO, with the benzothiazole and quinoline ring of this dye being able to be rotated relative to each other in the excited state. In these solvents, the free volume idea was found to provide a truthful report of the solvent viscosity-temperature behavior, and the probe torsional dynamics. Fluorescence lifetime imaging microscopy (FLIM) was used to insight and observed the distribution of lifetime of TO in the surface of both DESs. The contact angle was determined to show the hygroscopic nature of the DESs.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.saa.2021.119812DOI Listing

Publication Analysis

Top Keywords

thiazole orange
8
deep eutectic
8
eutectic solvents
8
torsional dynamics
8
chloride + urea mole
8
mole ratio
8
fluorescence quantum
8
quantum yield
8
fluorescence lifetime
8
dess
6

Similar Publications

The development of fluorescence-based methods for bioassays and medical diagnostics requires the design and synthesis of specific markers to target biological microobjects. However, biomolecular recognition in real cellular systems is not always as selective as desired. A new concept for creating fluorescent biomolecular probes, utilizing a fluorogenic dye and biodegradable, biocompatible nanomaterials, is demonstrated.

View Article and Find Full Text PDF

Selective binding of small molecule ligands to nucleic acids with high affinity and limited toxicity remains an important goal in the development of compounds that can probe DNA or RNA in cells. Thiazole orange is a cell semi-permeant, fluorescent cyanine dye, with low background noise, that binds several forms of nucleic acids. However, thiazole orange can exhibit cytotoxicity when used at high concentration and/or with prolonged exposure.

View Article and Find Full Text PDF

Visualization of guanine-rich oligonucleotides that fold into G-quadruplex (G4) helical structures is of great interest in cell biology. There is a large body of evidence that suggests that these noncanonical structures form and play important biological roles. A promising recent development highlighted fluorescence lifetime imaging microscopy (FLIM) as a robust technique for the direct and quantitative imaging of G4s in live cells.

View Article and Find Full Text PDF

Fluorogenic hybridization probes are essential tools in modern molecular biology techniques. They allow detection of specific nucleic acid molecules without the need to separate target-bound from unbound probes. To enable detection of targets at low concentration, fluorogenic probes should have high brightness.

View Article and Find Full Text PDF
Article Synopsis
  • * Traditional tools for studying RNA often suffer from high background signals due to their constant activation or reliance on UV light; this study introduces a new method using bioorthogonal cyclopropenones (CpOs) for more selective RNA cross-linking.
  • * The research demonstrates the effectiveness of CpO by showing it can create covalent cross-links with a specific RNA aptamer, offering a promising approach for investigating RNA in its natural state and expanding research tools in molecular biology.
View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!