After , is one of the most common fungal species associated with candidemia in nosocomial infections. Rapid acquisition of nutrients from the host is important for the survival of pathogens which possess the metabolic flexibility to assimilate different carbon and nitrogen compounds. In , nitrogen assimilation is controlled through a mechanism known as Nitrogen Catabolite Repression (NCR). NCR is coordinated by the action of four GATA factors; two positive regulators, Gat1 and Gln3, and two negative regulators, Gzf3 and Dal80. A mechanism in similar to NCR in has not been broadly studied. We previously showed that in , Gln3, and not Gat1, has a major role in nitrogen assimilation as opposed to what has been observed in in which both factors regulate NCR-sensitive genes. Here, we expand the knowledge about the role of Gln3 from through the transcriptional analysis of BG14 and strains. Approximately, 53.5% of the detected genes were differentially expressed (DEG). From these DEG, amino acid metabolism and ABC transporters were two of the most enriched KEGG categories in our analysis (Up-DEG and Down-DEG, respectively). Furthermore, a positive role of Gln3 in AAA assimilation was described, as was its role in the transcriptional regulation of . Finally, an unexpected negative role of Gln3 in the gene regulation of ABC transporters and and its associated transcriptional regulator was found. This observation was confirmed by a decreased susceptibility of the strain to fluconazole.
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http://dx.doi.org/10.4014/jmb.2012.12034 | DOI Listing |
Nucleic Acids Res
August 2024
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel.
Intrinsically disordered regions (IDRs) guide transcription factors (TFs) to their genomic binding sites, raising the question of how structure-lacking regions encode for complex binding patterns. We investigated this using the TF Gln3, revealing sets of IDR-embedded determinants that direct Gln3 binding to respective groups of functionally related promoters, and enable tuning binding preferences between environmental conditions, phospho-mimicking mutations, and orthologs. Through targeted mutations, we defined the role of short linear motifs (SLiMs) and co-binding TFs (Hap2) in stabilizing Gln3 at respiration-chain promoters, while providing evidence that Gln3 binding at nitrogen-associated promoters is encoded by the IDR amino-acid composition, independent of SLiMs or co-binding TFs.
View Article and Find Full Text PDFJ Trace Elem Med Biol
September 2023
Department of Genetics, Inonu University School of Medicine, Malatya 44280, Turkey; Department of Molecular Biology and Genetics, Izmir Institute of Technology, Izmir 35430, Turkey. Electronic address:
Although boron is an essential element for many organisms, an excess amount of it can cause toxicity, and the mechanism behind this toxicity is not yet fully understood. The Gcn4 transcription factor plays a crucial role in the boron stress response by directly activating the expression of the boron efflux pump Atr1. More than a dozen transcription factors and multiple cell signaling pathways have roles in regulating the Gcn4 transcription factor under various circumstances.
View Article and Find Full Text PDFAppl Microbiol Biotechnol
October 2022
Key Laboratory of Fermentation Engineering (Ministry of Education), National "111" Center for Cellular Regulation and Molecular Pharmaceutics, Hubei Provincial Cooperative Innovation Center of Industrial Fermentation, College of Bioengineering, Hubei University of Technology, Wuhan, 430068, People's Republic of China.
2-Phenylethanol (2-PE), a higher alcohol with a rose-like odor, has been widely utilized in food, perfume, and beverages. Saccharomyces cerevisiae is one of the most promising microorganisms for the biosynthesis of natural 2-PE. However, the growth of S.
View Article and Find Full Text PDFG3 (Bethesda)
March 2022
Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
In yeast physiology, a commonly used reference condition for many experiments, including those involving nitrogen catabolite repression (NCR), is growth in synthetic complete (SC) medium. Four SC formulations, SCCSH,1990, SCCSH,1994, SCCSH,2005, and SCME, have been used interchangeably as the nitrogen-rich medium of choice [Cold Spring Harbor Yeast Course Manuals (SCCSH) and a formulation in the methods in enzymology (SCME)]. It has been tacitly presumed that all of these formulations support equivalent responses.
View Article and Find Full Text PDFJ Microbiol Biotechnol
May 2021
División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica A. C. (IPICYT), Mexico.
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