We propose the utilisation of environmental covariates in random coefficient models to predict the genotype performances in new locations. Multi-environment trials (MET) are conducted to assess the performance of a set of genotypes in a target population of environments. From a grower's perspective, MET results must provide high accuracy and precision for predictions of genotype performance in new locations, i.e. the grower's locations, which hardly ever coincide with the locations at which the trials were conducted. Linear mixed modelling can provide predictions for new locations. Moreover, the precision of the predictions is of primary concern and should be assessed. Besides, the precision can be improved when auxiliary information is available to characterize the targeted locations. Thus, in this study, we demonstrate the benefit of using environmental information (covariates) for predicting genotype performance in some new locations for Swedish winter wheat official trials. Swedish MET locations can be stratified into zones, allowing borrowing information between zones when best linear unbiased prediction (BLUP) is used. To account for correlations between zones, as well as for intercepts and slopes for the regression on covariates, we fitted random coefficient (RC) models. The results showed that the RC model with appropriate covariate scaling and model for covariate terms improved the precision of predictions of genotypic performance for new locations. The prediction accuracy of the RC model was competitive compared to the model without covariates. The RC model reduced the standard errors of predictions for individual genotypes and standard errors of predictions of genotype differences in new locations by 30-38% and 12-40%, respectively.
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http://dx.doi.org/10.1007/s00122-021-03786-2 | DOI Listing |
J Anim Ecol
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School of Biodiversity, One Health and Veterinary Medicine, University of Glasgow, Glasgow, UK.
Research Highlight: Iannarilli, F., Gerber, B. D.
View Article and Find Full Text PDFEpidemiol Psychiatr Sci
January 2025
Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC, USA.
Aims: The impact of social determinants of health (SDOH) on mental health is increasingly realized. A comprehensive study examining the associations of SDOH with mental health disorders has yet to be accomplished. This study evaluated the associations between five domains of SDOH and the SDOH summary score and mental health disorders in the United States.
View Article and Find Full Text PDFCell Rep Med
January 2025
Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA. Electronic address:
Alpha-1 antitrypsin (AAT) deficiency (AATD) is a monogenic disease caused by misfolding of AAT variants resulting in gain-of-toxic aggregation in the liver and loss of monomer activity in the lung leading to chronic obstructive pulmonary disease (COPD). Using high-throughput screening, we discovered a bioactive natural product, phenethyl isothiocyanate (PEITC), highly enriched in cruciferous vegetables, including watercress and broccoli, which improves the level of monomer secretion and neutrophil elastase (NE) inhibitory activity of AAT-Z through the endoplasmic reticulum (ER) redox sensor protein disulfide isomerase (PDI) A4 (PDIA4). The intracellular polymer burden of AAT-Z can be managed by combination treatment of PEITC and an autophagy activator.
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RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic; Institute of Epidemiology & Health Care, University College London, London, United Kingdom. Electronic address:
Background: Evidence on the impact of complex neighborhood environment, including air pollution, greenness, and neighborhood socioeconomic deprivation (nSED) on cognitive health in older adults remains scarce. Both cognition and neighborhood environment are associated with physical activity, but little is known about the potential mediating role of physical activity in this association.
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J Bone Miner Res
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Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, United States.
Bone mineral density (BMD), an important marker of bone health, is regulated by a complex interaction of proteins. Plasma proteomic analyses can contribute to identification of proteins associated with changes in BMD. This may be especially informative in stages of bone accrual and peak BMD achievement (i.
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