Coffee corky-root disease causes serious damages to coffee crop and is linked to combined infection of spp. and root-knot nematodes spp. In this study, 70 isolates were collected from both roots of healthy coffee plants and with corky-root disease symptoms. A phylogenetic analysis, and the detection of pathogenicity genes and toxigenicity genes was performed for 59 and 11 isolates. Based on the molecular characterization, seven and three isolates were assessed for their pathogenicity on coffee seedlings under optimal watering and water stress miming root-knot nematode effect on plants. Our results revealed that a drastic increment of plant colonization capacity and pathogenicity on coffee plants of some isolates was caused by water stress. The pathogenicity on coffee of linked to coffee corky-root disease and the presence of genes in this species were demonstrated for the first time. Our study provides evidence for understanding the pathogenic basis of and isolates on coffee and revealed the presence of and genes as one of their pathogenicity-related mechanisms. We also highlight the relevance of chlorophyll, a fluorescence as an early and high-throughput phenotyping tool in pathogenicity studies on coffee.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8067267 | PMC |
http://dx.doi.org/10.3390/jof7040253 | DOI Listing |
Corky root rot is an important disease in tomato production systems and is caused by and (formerly Types 1 and 2, respectively). The corky root rot pathogens are slow growing and difficult to isolate and quantify in soil and plant tissue. A multiplex hydrolysis probe-based qPCR assay was designed to allow for simultaneous detection and quantification of and with a competitive internal control to indicate if qPCR inhibitors are present.
View Article and Find Full Text PDFJ Environ Manage
November 2022
Department of Plant & Microbial Biology, University of California at Berkeley, Berkeley, CA, 94720, USA.
Long-term contaminated environments have been recognized as potential hotspots for bacterial discovery in taxonomic and functional terms for bioremediation purposes. Here, bacterial diversity in waste sediment collected from a former industrial dumpsite and contaminated with petroleum hydrocarbon and heavy metals was investigated through the parallel application of culture-independent (16S rRNA gene amplicon sequencing) and -dependent (plate culturing followed by colony picking and identification of isolates by 16S rRNA gene Sanger sequencing) approaches. The bacterial diversities retrieved by both approaches greatly differed.
View Article and Find Full Text PDFJ Fungi (Basel)
March 2021
Red de Biodiversidad y Sistemática, Instituto de Ecología A.C. Carretera Antigua a Coatepec 351, El Haya, Xalapa, Veracruz 91073, Mexico.
Coffee corky-root disease causes serious damages to coffee crop and is linked to combined infection of spp. and root-knot nematodes spp. In this study, 70 isolates were collected from both roots of healthy coffee plants and with corky-root disease symptoms.
View Article and Find Full Text PDFPhytopathology
June 2021
Department of Plant Pathology, The Ohio State University, Wooster, OH 44691.
Tomato production in Ohio protected culture systems is hindered by a soilborne disease complex consisting of corky root rot (), black dot root rot (), Verticillium wilt (), and root-knot ( and ). In a survey of 71 high tunnels, was detected in 90% of high tunnels, and (46%), (48%), and spp. (45%) were found in nearly half of high tunnels.
View Article and Find Full Text PDFFront Plant Sci
February 2020
Red de Estudios Moleculares Avanzados and Red de Biodiversidad y Sistemática, Instituto de Ecología A. C., Xalapa, Mexico.
Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!