is an ectomycorrhizal fungus that has a symbiotic relationship with the root of . Soil microbial communities greatly affect the growth of , however, few studies have examined the characteristics of these communities. In the present study, we analyzed soil fungal communities from Gyeongju and Yeongdeok using metagenomic pyrosequencing to investigate differences in fungal species diversity, richness, and taxonomic composition between the soil under fruiting bodies (Sample 2) and soil where the fairy ring of was no longer present (Sample 1). The same spot was investigated three times at intervals of four months to observe changes in the community. In the samples from Yeongdeok, the number of valid reads was lower than that at Gyeongju. The operational taxonomic units of most Sample 2 groups were less than those of Sample 1 groups, indicating that fungal diversity was low in the dominant soil. The soil under the fruiting bodies was dominated by more than 51% . From fall to the following spring, the ratio of decreased. Basidiomycota was the dominant phylum in most samples. G-F1-2, G-F2-2, and Y-F1-2 had the genera , and in common. G-F1-1, G-F2-1, and Y-F1-1 had 10 genera including and in common. From fall to the following spring, the amount of phyla Basidiomycota and Mucoromycota gradually decreased but that of phylum Ascomycota increased. We suggest that the genus is positively related to .
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http://dx.doi.org/10.4014/jmb.2103.03021 | DOI Listing |
Sci Rep
January 2025
Department of Microbiology, Division of Laboratory Medicine, Oslo University Hospital, 0372, Oslo, Norway.
The respiratory tract is colonized with low-density microbial communities, which have been shown to impact human respiratory health through microbiota-host interactions. However, a lack of fast and cost-effective nucleic acid extraction method for low-microbial biomass samples hinders investigation of respiratory microbiota. Here, we performed a pilot study to assess the suitability of the NAxtra nucleic acid extraction protocol for profiling bacterial microbiota in respiratory samples.
View Article and Find Full Text PDFEcology
January 2025
Research Department, Holden Arboretum, Kirtland, Ohio, USA.
Shifting community assembly dynamics are an underappreciated mechanism by which warming will alter plant community composition. Germination timing (which can determine the order in which seedlings emerge within a community) will likely shift unevenly across species in response to warming. In seasonal environments where communities reassemble at the beginning of each growing season, changes in germination timing could lead to changes in seasonal priority effects, and ultimately community composition.
View Article and Find Full Text PDFBioresour Technol
January 2025
Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125 China; Guangxi Industrial Technology Researc Institute for Karst Rocky Desertification Control, Nanning 530000 China; Guangxi Key Laboratory of Karst Ecological Processes and Services, Huanjiang Observation and Research Station for Karst Ecosystems, Chinese Academy of Sciences, Huanjiang 547100 China. Electronic address:
Inoculating synthetic microbial community (SynCom) has been proposed as an eco-friendly approach for lignocellulose degradation in composting to enhance organic fertilizer quality. However, the mechanisms responsible for SynCom-regulated lignocellulose degradation during composting remain unclear. Here the SynCom inoculation decreased cellulose and hemicellulose contents by 26.
View Article and Find Full Text PDFJ Allergy Clin Immunol
January 2025
Department of Public Health Sciences, Henry Ford Health, Detroit, MI; Center for Bioinformatics, Henry Ford Health, Detroit, MI. Electronic address:
Background: Nocturnal cough affects approximately 1 in 3 children, can negatively impact child health, and is often attributable to asthma. The association of the gut microbiome with nocturnal cough has not been investigated.
Objective: To investigate the association between early-life gut microbiome composition and nocturnal cough overall and in the context of asthma.
Microb Pathog
January 2025
College of Veterinary Medicine, Qingdao Agricultural University, Qingdao, Shandong Province 266109, PR China. Electronic address:
Mycobiota represents an important component of the gut microbiome in poultry and plays important roles in host nutrition and metabolism. However, the understanding of gut mycobiota in laying hens during the production cycle is limited. The present study aimed to characterize the structure and diversity of fecal mycobiota and bacteriota and examine the interplays between both microbial communities in laying hens during different laying periods.
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