AI Article Synopsis

  • The decline in biodiversity during the Holocene has hindered our understanding of pre-human biodiversity, particularly on islands where many extinct species exhibited unique traits.
  • The Caribbean was once rich in bird diversity before human arrival, with unique flightless species that complicate the understanding of their evolutionary relationships through morphology alone.
  • A study of a nearly complete mitochondrial genome from extinct Caribbean birds revealed that one mysterious genus is related to flufftails rather than the rails, indicating a broader and more interconnected avian ancestry than currently seen.

Article Abstract

Worldwide decline in biodiversity during the Holocene has impeded a comprehensive understanding of pre-human biodiversity and biogeography. This is especially true on islands, because many recently extinct island taxa were morphologically unique, complicating assessment of their evolutionary relationships using morphology alone. The Caribbean remains an avian hotspot but was more diverse before human arrival in the Holocene. Among the recently extinct lineages is the enigmatic genus comprising three flightless species. Based on morphology, has been considered an aberrant rail (Rallidae) or related to flufftails (Sarothruridae). We recovered a nearly complete mitochondrial genome of from fossils, discovering that it is not a rallid but instead is sister to Sarothruridae, volant birds now restricted to Africa and New Guinea, and the recently extinct, flightless Aptornithidae of New Zealand. This result suggests a widespread or highly dispersive most recent common ancestor of the group. Prior to human settlement, the Caribbean avifauna had a far more cosmopolitan origin than is evident from extant species.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086980PMC
http://dx.doi.org/10.1098/rsbl.2020.0760DOI Listing

Publication Analysis

Top Keywords

ancient dna
4
extinct
4
dna extinct
4
extinct haitian
4
haitian cave-rail
4
cave-rail suggests
4
suggests biogeographic
4
biogeographic connection
4
connection caribbean
4
caribbean worldwide
4

Similar Publications

The cranium from the Octagon in Ephesos.

Sci Rep

January 2025

Department of Evolutionary Anthropology, University of Vienna, Djerassiplatz 1, A-1030, Vienna, Austria.

During excavations in 1929, a well-preserved skeleton was discovered in a sarcophagus in the Octagon at Ephesos (Turkey). For the following century, archaeologists have speculated about the identity of this obviously notable person. Repeated claim is that the remains could represent Arsinoë IV, daughter of Ptolemy XII, and younger (half-)sister of Cleopatra VII.

View Article and Find Full Text PDF

Progress on ancient DNA investigation of Late Quaternary mammals in China.

Yi Chuan

January 2025

State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China.

It has been more than 40 years since the beginning of exploring the genetic composition of ancient organisms from the perspective of ancient DNA. In the recent 20 years, with the development and application of high-throughput sequencing technology platforms and the improved efficiency of retrieving highly fragmented DNA molecules, ancient DNA research moved forward to a brand-new era of deep-time paleogenomics. It not only solved many controversial phylogenetic problems, enriched the migration and evolution details of various organisms including humans, but also launched exploration of the molecular responses to climate changes in terms of "whole genomic-big data-multi-species" level.

View Article and Find Full Text PDF

The northern part of Asia, including Siberia, the Mongolian Plateau, and northern China, is not only a crossroads for population exchange on the Eurasian continent but also an important bridge connecting the American continent. This region holds a unique and irreplaceable significance in exploring the origins of humanity, tracking human migration routes, and elucidating evolutionary mechanisms. Despite the limited number of samples unearthed, varying preservation conditions, and constraints of technical means, our understanding of the interactions among populations in northern Asia is still in its infancy.

View Article and Find Full Text PDF

Over the past decade, the continuous development of ancient genomic technology and research has significantly advanced our understanding of human history. Since 2017, large-scale studies of ancient human genomes in East Asia, particularly in China, have emerged, resulting in a wealth of ancient genomic data from various time periods and locations, which has provided new insights into the genetic history of East Asian populations over tens of thousands of years. Especially since 2022, there emerged a series of new research progresses in the genetic histories of the northern and southern Chinese populations within the past 10,000 years.

View Article and Find Full Text PDF

We investigate alternative strategies against reference bias and postmortem damage in low coverage paleogenomes. Compared to alignment to the linear reference genome, we show that masking known polymorphic sites and graph alignment effectively remove reference bias, but only starting from raw read files. We next study approaches to overcome postmortem damage: trimming, rescaling, and our newly developed algorithm, bamRefine (github.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!