Most torsional barriers are predicted with high accuracies (about 1 kJ/mol) by standard semilocal functionals, but a small subset was found to have much larger errors. We created a database of almost 300 carbon-carbon torsional barriers, including 12 poorly behaved barriers, that stem from the Y═C-X group, where Y is O or S and X is a halide. Functionals with enhanced exchange mixing (about 50%) worked well for all barriers. We found that poor actors have delocalization errors caused by hyperconjugation. These problematic calculations are density-sensitive (i.e., DFT predictions change noticeably with the density), and using HF densities (HF-DFT) fixes these issues. For example, conventional B3LYP performs as accurately as exchange-enhanced functionals if the HF density is used. For long-chain conjugated molecules, HF-DFT can be much better than exchange-enhanced functionals. We suggest that HF-PBE0 has the best overall performance.
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http://dx.doi.org/10.1021/acs.jpclett.1c00426 | DOI Listing |
J Comput Chem
January 2025
Regional Center of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, Olomouc, Czech Republic.
Doxorubicin (DOX) is a widely used chemotherapeutic agent known for intercalating into DNA. However, the exact modes of DOX interactions with various DNA structures remain unclear. Using molecular dynamics (MD) simulations, we explored DOX interactions with DNA duplexes (dsDNA), G-quadruplex, and nucleosome.
View Article and Find Full Text PDFJ Chem Phys
January 2025
Department of Chemistry, Tennessee Tech University, Cookeville, Tennessee 38505, USA.
The first ground-state rotational spectrum of 3-methylstyrene (3MS) was measured by Fourier transform microwave spectroscopy under supersonic jet-cooled conditions. Transitions were assigned for two conformers: cis-3MS and trans-3MS. In the cis conformer, the vinyl group is oriented toward the methyl group, while in the trans conformer, it is positioned away from the methyl.
View Article and Find Full Text PDFJ Org Chem
January 2025
Center for Nanosystems Chemistry (CNC), Universität Würzburg, Theodor-Boveri-Weg, 97074 Würzburg, Germany.
Chiral organic molecules with a complementing π-structure are highly desired to obtain materials with good semiconducting properties and pronounced chirality effects in the visible region. Herein, we introduce a novel design strategy to achieve an axially chiral and rigid perylene bisimide (PBI) dye by attaching the chirality-inducing 2,2'-biphenoxy moiety at one side of the bay area and the rigidity-inducing di--butylsilanediol bridge on the other side. This yielded a new bay-functionalized PBI derivative carrying the combination of a highly rigid and, simultaneously, an axially chiral perylene core.
View Article and Find Full Text PDFAm J Emerg Med
December 2024
Cook County Health, Chicago, IL, USA.
Ketamine is an NMDA receptor antagonist commonly used as a dissociative anesthetic and analgesic. Though it is conventionally administered via the intravenous, intramuscular, or intranasal route, use as a compounded analgesic cream is becoming increasingly common. This is a case report of a 61-year-old man who was detained by the police for erratic driving.
View Article and Find Full Text PDFJ Phys Chem Lett
January 2025
Univ Paris Est Creteil and Université Paris Cité, CNRS, LISA, F-94010 Créteil, France.
Large amplitude motions (LAMs), most notably represented by proton tunneling, mark a significant departure from small amplitude vibrations where protons merely oscillate around their equilibrium positions. These substantial displacements require tunneling through potential energy barriers, leading to splittings in, e.g.
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