Using machine learning improves predictions of herd-level bovine tuberculosis breakdowns in Great Britain.

Sci Rep

The Epidemiology, Economics and Risk Assessment (EERA) Group, The Roslin Institute, Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Easter Bush, Midlothian, UK.

Published: January 2021

AI Article Synopsis

  • Bovine tuberculosis (bTB) in the UK remains poorly controlled despite significant spending, costing around £100 million per year.
  • Researchers applied machine learning techniques to enhance the sensitivity of diagnostic tests for bTB, using data from 2012-2014 that included about 4,700 positive test results annually.
  • The best machine learning model improved the detection capabilities, increasing sensitivity from 61.3% to 67.6% and specificity from 90.5% to 92.3%, demonstrating potential for better disease control in cattle herds.

Article Abstract

In the United Kingdom, despite decades of control efforts, bovine tuberculosis (bTB) has not been controlled and currently costs ~ £100 m annually. Critical in the failure of control efforts has been the lack of a sufficiently sensitive diagnostic test. Here we use machine learning (ML) to predict herd-level bTB breakdowns in Great Britain (GB) with the aim of improving herd-level diagnostic sensitivity. The results of routinely-collected herd-level tests were correlated with risk factor data. Four ML methods were independently trained with data from 2012-2014 including ~ 4700 positive herd-level test results annually. The best model's performance was compared to the observed sensitivity and specificity of the herd-level test calculated on the 2015 data resulting in an increased herd-level sensitivity from 61.3 to 67.6% (95% confidence interval (CI): 66.4-68.8%) and herd-level specificity from 90.5 to 92.3% (95% CI: 91.6-93.1%). This approach can improve predictive capability for herd-level bTB and support disease control.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7838174PMC
http://dx.doi.org/10.1038/s41598-021-81716-4DOI Listing

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