We assembled the plastome of the temperate, Southern Hemisphere liana from high throughput sequencing data (paired-end Illumina reads) generated from total genomic DNA sequencing libraries. . ' chloroplast genome sequence (GenBank: MG604297) is 163,484 bp in length and composed of long single copy (LSC; 88,166 bp) and short single copy (SSC; 13,486 bp) regions flanked by inverted repeats (IR; 30,916 bp each) typical for angiosperms. The plastome includes 131 genes comprising 83 protein-coding genes, 37 transfer RNA genes, eight ribosomal RNA genes, two possible pseudogenes, and with internal stop codons, and truncated repeats of and at IR boundaries.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800917 | PMC |
http://dx.doi.org/10.1080/23802359.2018.1456979 | DOI Listing |
Genes (Basel)
November 2024
Chongqing Engineering Research Center for Horticultural Plant, College of Smart Agriculture, Chongqing University of Arts and Sciences, Chongqing 402160, China.
Background: Mill., a morphologically diverse herbaceous perennial genus of Zingiberaceae, is distributed mainly in tropical to warm-temperate Asia. In China, species of have crucial medicinal, edible, and horticultural values; however, their phylogenetic relationships remain unclear.
View Article and Find Full Text PDFGenomics
September 2024
Hunan University of Medicine General Hospital, 418008 Huaihua, Hunan, China.. Electronic address:
Background: Santalum album L. is an evergreen tree which is mainly distributes throughout tropical and temperate regions. And it has a great medicinal and economic value.
View Article and Find Full Text PDFMol Phylogenet Evol
October 2024
Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; University of Chinese Academy of Sciences, Beijing 10049, China. Electronic address:
Cypripedioideae (slipper orchids; Orchidaceae) currently consist of ∼200 herbaceous species with a strikingly disjunctive distribution in tropical and temperate regions of both hemispheres. In this study, an updated phylogeny with representatives from all five cypripedioid genera was presented based on maximum likelihood and Bayesian inference of plastome and low-copy nuclear genes. Phylogenomic analyses indicated that each genus is monophyletic, but some relationships (e.
View Article and Find Full Text PDFBMC Plant Biol
May 2024
Biology Department, Claflin University, Orangeburg, South Carolina, USA.
Background: The Polygonaceae is a family well-known for its weeds, and edible plants, Fagopyrum (buckwheat) and Rheum (rhubarb), which are primarily herbaceous and temperate in distribution. Yet, the family also contains a number of lineages that are principally distributed in the tropics and subtropics. Notably, these lineages are woody, unlike their temperate relatives.
View Article and Find Full Text PDFGenomics
May 2024
Germplasm Bank of Wild Species, Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; University of Chinese Academy of Sciences, Beijing 100049, China. Electronic address:
Rubus, the largest genus in Rosaceae, contains over 1400 species that distributed in multiple habitats across the world, with high species diversity in the temperate regions of Northern Hemisphere. Multiple Rubus species are cultivated for their valuable fruits. However, the intrageneric classification and phylogenetic relationships are still poorly understood.
View Article and Find Full Text PDFEnter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!