We present efficient implementations of the multilevel CC2 (MLCC2) and multilevel CCSD (MLCCSD) models. As the system size increases, MLCC2 and MLCCSD exhibit the scaling of the lower-level coupled cluster model. To treat large systems, we combine MLCC2 and MLCCSD with a reduced-space approach in which the multilevel coupled cluster calculation is performed in a significantly truncated molecular orbital basis. The truncation scheme is based on the selection of an active region of the molecular system and the subsequent construction of localized Hartree-Fock orbitals. These orbitals are used in the multilevel coupled cluster calculation. The electron repulsion integrals are Cholesky decomposed using a screening protocol that guarantees accuracy in the truncated molecular orbital basis and reduces computational cost. The Cholesky factors are constructed directly in the truncated basis, ensuring low storage requirements. Systems for which Hartree-Fock is too expensive can be treated by using a multilevel Hartree-Fock reference. With the reduced-space approach, we can handle systems with more than a thousand atoms. This is demonstrated for paranitroaniline in aqueous solution.
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http://dx.doi.org/10.1021/acs.jctc.0c00590 | DOI Listing |
J Chem Theory Comput
January 2025
Research Unit of Structural Chemistry & Computational Biophysics, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin 13125, Germany.
Density functional theory (DFT) calculations have emerged as a powerful theoretical toolbox for interpreting and analyzing the experimental nuclear magnetic resonance (NMR) spectra of chemical compounds. While DFT has been extensively used and benchmarked for isotropic NMR observables, the evaluation of the full chemical shielding tensor, which is necessary for interpreting residual chemical shift anisotropy (RCSA), has received much less attention, despite its recent applications in the structural elucidation of organic molecules. In this study, we present a comprehensive benchmark of carbon shielding anisotropies based on coupled cluster reference tensors taken from the NS372 benchmark data set.
View Article and Find Full Text PDFEnviron Geochem Health
January 2025
Department of Biochemistry, College of Sciences, King Saud University, 11451, Riyadh, Saudi Arabia.
The effect of open-pit bauxite mining on beach sediment contamination in the urban coastal environment of Kuantan City, Malaysia, was investigated. The contents of 11 heavy metals (Pb, Cd, Al, Mn, Cu, Zn, Fe, As, Ni, Cr, and Ag) in 30 samples from Kuantan beach sediment zones (supratidal, intertidal, and subtidal) were determined using inductively coupled plasma optical emission spectrometry followed by contamination indexes, Pearson's correlation analysis, and principal component analysis (PCA). The results indicated that Cd, As, Ni, and Ag values in beach sediment zones were significantly higher compared to background values.
View Article and Find Full Text PDFFront Cell Infect Microbiol
December 2024
State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China.
() is one of the primary agents involved in porcine respiratory disease complex, and circulates in the swine industry worldwide. The prevention and control of is complicated. Thus, a recombinase-aided amplification (RAA) assay coupled with the clustered regularly-interspaced short palindromic repeats (CRISPR)/Cas12a system was established for the detection of .
View Article and Find Full Text PDFFood Sci Biotechnol
January 2025
QU Health, College of Health Sciences, Qatar University, P.O. Box 2713, Doha, Qatar.
In recent years, there has been a growing interest in developing a distinguished alternative to human consumption of animal-based proteins. The application of lentil proteins in the food industry is typically limited due to their poor solubility and digestibility. An innovative method of balancing lentil-whey protein (LP-WP) complexes with higher-quality protein properties was established to address this issue, which coupled a pH-shifting approach with fermentation treatment.
View Article and Find Full Text PDFACS Omega
December 2024
Faculty of Health Science, University of Ss. Cyril and Methodius, 91701 Trnava, Slovakia.
A hybrid B3LYP version of the Density Functional Theory was applied in full geometry optimization followed by vibrational analysis of mustard-type molecules acting as antiblood cancer agents: melphalan and bendamustine. All calculations were performed with water as a solvent. In addition to the ground-state properties (dipole moment, quadrupole moment, dipole polarizability, solvated surface and volume, zero-point vibration energy, total entropic term), properties that characterize adiabatic redox processes (ionization energy, electron affinity, molecular electronegativity, chemical hardness, electrophilicity index) together with the absolute oxidation and reduction potentials were evaluated.
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