Assessing SIRAH's Capability to Simulate Intrinsically Disordered Proteins and Peptides.

J Chem Theory Comput

Institut Pasteur de Montevideo, Mataojo 2020, Montevideo, CP 11400, Uruguay.

Published: February 2021

The challenges posed by intrinsically disordered proteins (IDPs) to atomistic and coarse-grained (CG) simulations are boosting efforts to develop and reparametrize current force fields. An assessment of the dynamical behavior of IDPs' and unstructured peptides with the CG SIRAH force field suggests that the current version achieves a fair description of IDPs' conformational flexibility. Moreover, we found a remarkable capability to capture the effect of point mutations in loosely structured peptides.

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Source
http://dx.doi.org/10.1021/acs.jctc.0c00948DOI Listing

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