When predicting a certain subject-level variable (e.g., age in years) from measured biological data (e.g., structural MRI scans), the decoding algorithm does not always preserve the distribution of the variable to predict. In such a situation, distributional transformation (DT), i.e., mapping the predicted values to the variable's distribution in the training data, might improve decoding accuracy. Here, we tested the potential of DT within the 2019 Predictive Analytics Competition (PAC) which aimed at predicting chronological age of adult human subjects from structural MRI data. In a low-dimensional setting, i.e., with less features than observations, we applied multiple linear regression, support vector regression and deep neural networks for out-of-sample prediction of subject age. We found that (i) when the number of features is low, no method outperforms linear regression; and (ii) except when using deep regression, distributional transformation increases decoding performance, reducing the mean absolute error (MAE) by about half a year. We conclude that DT can be advantageous when predicting variables that are non-controlled, but have an underlying distribution in healthy or diseased populations.
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http://dx.doi.org/10.3389/fpsyt.2020.604268 | DOI Listing |
J Comput Biol
December 2024
Laboratoire d'Informatique de Bourgogne, Université de Bourgogne, Dijon Cedex, France.
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View Article and Find Full Text PDFmSystems
December 2024
School of Biological Sciences, The University of Auckland, Auckland, New Zealand.
The genus () is most often associated with human clinical samples and livestock. However, are also prevalent in the hindgut of the marine herbivorous fish (Silver Drummer), and analysis of their carbohydrate-active enzyme (CAZyme) encoding gene repertoires suggests degrade macroalgal biomass to support fish nutrition. To further explore host-associated traits unique to -derived , we compared 445 high-quality genomes of available in public databases (e.
View Article and Find Full Text PDFBioscience
December 2024
Department of Evolutionary and Integrative Ecology, Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB).
In the era of big data and global biodiversity decline, there is a pressing need to transform data and information into findable and actionable knowledge. We propose a conceptual classification scheme for invasion science that goes beyond hypothesis networks and allows to organize publications and data sets, guide research directions, and identify knowledge gaps. Combining expert knowledge with literature analysis, we identified five major research themes in this field: introduction pathways, invasion success and invasibility, impacts of invasion, managing biological invasions, and meta-invasion science.
View Article and Find Full Text PDFThe class of a-b power interaction models, proposed by Yu et al. (2024), provides a general framework for modeling sparse compositional count data with pairwise feature interactions. This class includes many distributions as special cases and enables modeling of zero counts through power transformations, making it particularly suitable for modern high-throughput sequencing data with excess zeros, including single-cell RNA-Seq and microbial amplicon data.
View Article and Find Full Text PDFSmall
December 2024
School of Materials Science and Engineering, State Key Laboratory of Optoelectronic Materials and Technologies, Sun Yat-sen University, Guangzhou, 510275, P. R. China.
NaNiMnO (NNM) is regarded as a promising cathode material for Na-ion batteries (NIBs), but suffers from irreversible phase transformations characterized by multiple voltage plateaus, resulting in poor cycle stability and inferior rate capability. To address these issues, the NaNiCuZnMnO (NNCZM) cathode material is synthesized by a cation chelation and reassembly process, which can promote a more uniform element distribution than that prepared by the solid-state method (S-NNCZM), resulting in better Na diffusion kinetics and rate capability. Replacing Ni with a small amount of Zn prevents the P2-O2 phase transformation, while replacing Ni with an appropriate amount of electrochemically active Cu eliminates Na-vacancy ordering and additionally contributes to capacity.
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