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Co-profiling of single-cell gene expression and chromatin landscapes in stickleback pituitary.
Sci Data
January 2025
Laboratory of Molecular Ecological Genetics, Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.
The pituitary gland is a key endocrine gland with various physiological functions including metabolism, growth, and reproduction. It comprises several distinct cell populations that release multiple polypeptide hormones. Although the major endocrine cell types are conserved across taxa, the regulatory mechanisms of gene expression and chromatin organization in specific cell types remain poorly understood.
View Article and Find Full Text PDFChromosome-level haplotype-resolved genome of the tropical loach (Oreonectes platycephalus).
Sci Data
January 2025
Area of Ecology and Biodiversity, School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China.
The flat-headed loach (Oreonectes platycephalus) is a small fish inhabiting headwaters of hillstreams of southern China. Its local populations are characterized by low genetic diversity and exceptionally high differentiation, making it an ideal model for studying small population isolates' persistence and adaptive potential. However, the lack of Oreonectes reference genomes limits endeavours toward these ambitions.
View Article and Find Full Text PDFChromosome-Level Genome Assembly of (Teleostei, Cyprinidae) and Population Genomics of the Complex: Impacts of Geological and Climate Changes on Species Evolution in Southwest China.
Int J Mol Sci
December 2024
College of Chinese Materia Medica, Yunnan University of Chinese Medicine, Kunming 650500, China.
The genus is distributed in the eastern three rivers on the Yunnan-Guizhou Plateau and its adjacent regions, located to the southeast of the Qinghai-Tibet Plateau. Its origin and evolution are likely influenced by the uplift of the Qinghai-Tibet Plateau. However, the historical impact of geological events on the divergence and distribution of this fish group has not been fully elucidated.
View Article and Find Full Text PDFChromosome-Level Assembly and Annotation of the Endangered Red-Wing Fish ().
Genes (Basel)
November 2024
Yunnan Institute of Fishery Sciences Research, Kunming 650111, China.
The red-wing fish (), an endangered species native to Yunnan, is endemic to Chenghai Lake. The natural population of this species has suffered a sharp decline due to the invasion of alien fish species. Fortunately, the artificial domestication and reproduction of have been successful and this species has become an economic species locally.
View Article and Find Full Text PDFA chromosome-anchored reference assembly for the gray snapper, Lutjanus griseus.
Mol Biol Rep
January 2025
School of Ocean Science and Engineering, The University of Southern Mississippi, Ocean Springs, MS, 39564, USA.
Background: The gray snapper (Lutjanus griseus) is a marine reef fish commonly found in coastal and shelf waters of the tropical and subtropical western Atlantic Ocean. In this work, a draft reference genome was developed to support population genomic studies of gray snapper needed to assist with conservation and fisheries management efforts.
Methods And Results: Hybrid assembly of PacBio and Illumina sequencing reads yielded a 1,003,098,032 bp reference across 2039 scaffolds with N50 and L50 values of 1,691,591 bp and 163 scaffolds, respectively.
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