A new end-on low-spin ferric heme peroxide, [(P )Fe -(O )] (P -P), and subsequently formed hydroperoxide species, [(P )Fe -(OOH)] (P -HP) are generated utilizing the iron-porphyrinate P with its tethered axial base imidazolyl group. Measured thermodynamic parameters, the ferric heme superoxide [(P )Fe -(O )] (P -S) reduction potential (E°') and the P -HP pK value, lead to the finding of the OO-H bond-dissociation free energy (BDFE) of P -HP as 69.5 kcal mol using a thermodynamic square scheme and Bordwell relationship. The results are validated by the observed oxidizing ability of P -S via hydrogen-atom transfer (HAT) compared to that of the F superoxide complex, [(F )Fe -(O )] (S) (F =tetrakis(2,6-difluorophenyl)porphyrinate, without an internally appended axial base imidazolyl), as determined from reactivity comparison of superoxide complexes P -S and S with the hydroxylamine (O-H) substrates TEMPO-H and ABNO-H.
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http://dx.doi.org/10.1002/anie.202013791 | DOI Listing |
Cytochrome P450s (CYPs) are a superfamily of thiolate-ligated heme metalloenzymes principally responsible for the hydroxylation of unactivated C-H bonds. The lower-axial cysteine is an obligatory and universally conserved residue for the CYP enzyme class. Herein, we challenge this paradigm by systematically identifying non-canonical CYPs (ncCYPs) that do not harbor a cysteine ligand.
View Article and Find Full Text PDFJ Comput Chem
January 2025
Chemistry Department, Southern Methodist University, Dallas, Texas, USA.
Using the QM/MM methodology and a local mode analysis, we investigated a character and a strength of FeS bonds of heme groups in oxidized and reduced forms of Bacterioferritin from Azotobacter vinelandii. The strength of the FeS bonds was correlated with a bond length, an energy density at a bond critical point, and a charge difference of the F and S atoms. Changing the oxidation state from ferrous to ferric generally makes the FeS bonds weaker, longer, more covalent, and more polar.
View Article and Find Full Text PDFFront Microbiol
December 2024
Department of Biomedical Sciences, Humanitas University, Milan, Italy.
is a significant public health concern due to the emergence of antibiotic-resistant strains. Cefiderocol (FDC), a novel siderophore cephalosporin, has shown promise as a last-line treatment for multidrug-resistant Gram-negative bacteria. However, the emergence of -acquired FDC-resistant strains highlights the need for advanced tools to identify resistance-associated genomic mutations and address the challenges of FDC susceptibility testing.
View Article and Find Full Text PDFBiochem Biophys Res Commun
January 2025
Department of Chemistry, North Carolina State University, Raleigh, NC, 27695, USA. Electronic address:
Hemoglobin and myoglobin are known to undergo autoxidation, in which the oxyferrous form of the heme is oxidized to the ferric state by O. Dehaloperoxidase-A (DHP-A), a multifunctional catalytic hemoglobin from Amphitrite ornata is an exception and is observed to undergo the reverse process, during which the ferric heme is spontaneously reduced to the oxyferrous form under aerobic conditions. The high reduction potential of DHP (+202 mV at pH 7.
View Article and Find Full Text PDFJ Biol Chem
December 2024
Department of Chemistry, University of Georgia, Athens, GA 30602. Electronic address:
Pyrrolnitrin, a potent antifungal compound originally discovered in Pseudomonas strains, is biosynthesized through a secondary metabolic pathway involving four key enzymes. Central to this process is PrnB, a heme enzyme that catalyzes the complex transformation of 7-Cl-L-tryptophan. Despite its structural similarity to indoleamine 2,3-dioxygenase (IDO) and tryptophan 2,3-dioxygenase (TDO) and its classification within the histidine-ligated heme-dependent aromatic oxygenase (HDAO) superfamily, PrnB has remained relatively unexplored due to challenges in reconstituting its in vitro activity.
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