Two well-known drawbacks in fuzzy clustering are the requirement of assigning in advance the number of clusters and random initialization of cluster centers. The quality of the final fuzzy clusters depends heavily on the initial choice of the number of clusters and the initialization of the clusters, then, it is necessary to apply a validity index to measure the compactness and the separability of the final clusters and run the clustering algorithm several times. We propose a new fuzzy C-means algorithm in which a validity index based on the concepts of maximum fuzzy energy and minimum fuzzy entropy is applied to initialize the cluster centers and to find the optimal number of clusters and initial cluster centers in order to obtain a good clustering quality, without increasing time consumption. We test our algorithm on UCI (University of California at Irvine) machine learning classification datasets comparing the results with the ones obtained by using well-known validity indices and variations of fuzzy C-means by using optimization algorithms in the initialization phase. The comparison results show that our algorithm represents an optimal trade-off between the quality of clustering and the time consumption.
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http://dx.doi.org/10.3390/e22111200 | DOI Listing |
Calcif Tissue Int
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Jerry L. Pettis Memorial VA Medical Center, VA Loma Linda Healthcare System, Loma Linda, CA, USA.
This study assessed the feasibility of miR17 ~ 92-based antiresorptive strategy by determining the effects of conditional transgenic (cTG) overexpression of miR17 ~ 92 in myeloid cells on bone and osteoclasts. Osteoclasts of male and female cTG mutant mice each showed 3- to fivefold overexpression of miR17 ~ 92 cluster genes compared to those of age- and sex-matched wildtype (WT) littermates. Male but not female cTG mutant mice had more trabecular and cortical bones as well as lower bone resorption reflected by reduction in osteoclast number and resorbing surface.
View Article and Find Full Text PDFCancer Immunol Immunother
January 2025
Prostate Cancer Research Center, Faculty of Medicine and Health Technology, Tampere University and Tampere University Hospital, Tampere, Finland.
The tumor immune microenvironment (TiME) of human central nervous system (CNS) tumors remains to be comprehensively deciphered. Here, we employed flow cytometry and RNA sequencing analysis for a deep data-driven dissection of a diverse TiME and to uncover noncanonical immune cell types in human CNS tumors by using seven tumors from five patients. Myeloid subsets comprised classical microglia, monocyte-derived macrophages, neutrophils, and two noncanonical myeloid subsets: CD3 myeloids and CD19 myeloids.
View Article and Find Full Text PDFBrief Bioinform
November 2024
Institute of Statistics and Big Data, Renmin University of China, No. 59 Zhongguancun Street, 100872 Beijing, China.
The spatial transcriptomics is a rapidly evolving biological technology that simultaneously measures the gene expression profiles and the spatial locations of spots. With progressive advances, current spatial transcriptomic techniques can achieve the cellular or even the subcellular resolution, making it possible to explore the fine-grained spatial pattern of cell types within one tissue section. However, most existing cell spatial clustering methods require a correct specification of the cell type number, which is hard to determine in the practical exploratory data analysis.
View Article and Find Full Text PDFAlzheimers Dement
December 2024
Indiana University School of Medicine, Indianapolis, IN, USA.
Background: Genome-wide association studies (GWAS) identified the ATP binding cassette subfamily A member 7 (ABCA7) gene as increasing risk for Alzheimer's disease (AD). ABC proteins transport various molecules across extra and intra-cellular membranes. ABCA7 is part of the ABC1 subfamily and is expressed in brain cells including neurons, astrocytes, microglia, endothelial cells and pericytes.
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