A Domino Fusion of an Organic Ligand Depended on Metal-Induced and Oxygen Insertion, Unraveled by Crystallography, Mass Spectrometry, and DFT Calculations.

Chemistry

Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmaceutical Sciences, Guangxi Normal University, Guilin, 541004, P.R. China.

Published: February 2021

AI Article Synopsis

  • The study examines the reaction of a benzoimidazole compound with cobalt chloride in acetonitrile, resulting in the synthesis of a complex dimeric cluster.
  • When both oxygen and water are present, a carbonyl amide intermediate forms before a new compound is created, showing distinct crystallographic structures and processes.
  • The research highlights how the metal's oxidation state and coordination affect the reaction pathways, offering a unique method for producing complex organic molecules not easily achieved through traditional synthesis techniques.

Article Abstract

Herein, the reaction of (1-methyl-1 H-benzo[d]imidazol-2-yl)methanamine (L1) with Co(H O) Cl , in CH CN at 120 °C, leading to the 2,3,5,6-tetrakis(1-methyl-1 H-benzo[d]imidazol-2-yl)pyrazine (3), isolated as a dimeric cluster {[Co (3)Cl ]⋅2 CH CN} (2), is reported. When O and H O are present, (1-methyl-1 H-benzo[d]imidazole-2-carbonyl)amide (HL1') is first formed and crystallized as [Co (L1) (L1')]Cl ⋅2 H O (4) before fusion of HL1' with L1, giving 1-methyl-N-(1-methyl-1 H-benzo[d]imidazol-2-carbonyl)-1 H-benzo[d]imidazol-2-carboxamide (HL2'') forming a one-dimensional (1D) chain of [Co (L2'') Cl ] (5). The combination of crystallography and mass spectrometry (ESI-MS) of isolated crystals and the solutions taken from the reaction as a function time reveal seven intermediate steps leading to 2, but six steps for 5, for which a different sequence takes place. Control and isotope labeling experiments confirm the two carbonyl oxygen atoms in 5 originate from both air and water. The dependence on the metals, compared with FeCl ⋅6 H O leading to a stable triheteroarylmethyl radical, is quite astounding, which could be attributed to the different oxidation states of the metals and coordination modes confirmed by DFT calculations. This metal and valence dependent process is a very useful way for selectively obtaining these large molecules, which are unachievable by common organic synthesis.

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http://dx.doi.org/10.1002/chem.202004396DOI Listing

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