Increasing the growth rate of the industrial host is a promising target to rise productivities of growth coupled product formation. As a prerequisite, detailed knowledge about the tight regulation network is necessary for identifying promising metabolic engineering goals. Here, we present comprehensive metabolic and transcriptional analysis of ATCC 13032 growing under glucose limited chemostat conditions with μ = 0.2, 0.3, and 0.4 h. Intermediates of central metabolism mostly showed rising pool sizes with increasing growth. C-metabolic flux analysis (C-MFA) underlined the fundamental role of central metabolism for the supply of precursors, redox, and energy equivalents. Global, growth-associated, concerted transcriptional patterns were not detected giving rise to the conclusion that glycolysis, pentose-phosphate pathway, and citric acid cycle are predominately metabolically controlled under glucose-limiting chemostat conditions. However, evidence is found that transcriptional regulation takes control over glycolysis once glucose-rich growth conditions are installed.
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http://dx.doi.org/10.3389/fbioe.2020.584614 | DOI Listing |
Appl Microbiol Biotechnol
December 2024
Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629 HZ, Delft, The Netherlands.
Syngas fermentation to ethanol has reached industrial production. Further improvement of this process would be aided by quantitative understanding of the influence of imposed reaction conditions on the fermentation performance. That requires a reliable model of the microbial kinetics.
View Article and Find Full Text PDFBiotechnol Biofuels Bioprod
December 2024
Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629 HZ, Delft, The Netherlands.
Evolution
November 2024
Department of Ecology, Evolution, and Marine Biology, UC Santa Barbara, Santa Barbara, CA 93106, USA.
In constant environments the coexistence of similar species or genotypes is generally limited. In a metapopulation context, however, types that utilize the same resource but are distributed along a competition-colonization trade-off, can coexist. Much thought in this area focuses on a generic trade-off between within-deme competitive ability and between-deme dispersal ability.
View Article and Find Full Text PDFBiotechnol Biofuels Bioprod
November 2024
Department of Cellular Engineering and Biocatalyst. Instituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad 2001, Col. Chamilpa, 62210, Cuernavaca, Morelos, México.
STAR Protoc
December 2024
Chair of Nutrition and Immunology, TUM School of Life Sciences, Technical University of Munich, 85354 Freising, Germany; TUMCREATE, 1 CREATE Way, #10-02 CREATE Tower, Singapore 138602, Singapore; ZIEL Institute for Food & Health, Technical University of Munich, 85354 Freising, Germany. Electronic address:
Chemostat systems can be used to cultivate complex intestinal microbial communities ex vivo. Here, we present a protocol to transfer bacteria from human fecal material into chemostat systems as well as settings to simulate infant or adult colonic conditions. We describe the experimental setup, media design, donor selection, 16S rRNA amplicon sequencing, and circadian analysis of bacterial abundance.
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