AI Article Synopsis

  • Fluorescent biosensors, especially those based on fluorescent proteins (FPs), are effective for monitoring cellular processes in live organisms due to their selectivity and minimal invasiveness.
  • They have been widely used in plant research to track changes in various factors like pH, ion concentration, and redox state.
  • The chapter highlights the application of FP-based biosensors in plants, particularly focusing on monitoring intracellular calcium dynamics in Arabidopsis thaliana using a specific genetically encoded Ca indicator.

Article Abstract

Fluorescent biosensors are powerful tools for tracking analytes or cellular processes in live organisms and allowing visualization of the spatial and temporal dynamics of cellular regulators. Fluorescent protein (FP)-based biosensors are extensively employed due to their high selectivity and low invasiveness. A variety of FP-based biosensors have been engineered and applied in plant research to visualize dynamic changes in pH, redox state, concentration of molecules (ions, sugars, peptides, ATP, reactive oxygen species, and phytohormones), and activity of transporters. In this chapter, we briefly summarize reported uses of FP-based biosensors in planta and show simple methods to monitor the dynamics of intracellular Ca in Arabidopsis thaliana using a ratiometric genetically encoded Ca indicator, MatryoshCaMP6s.

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-0716-0880-7_14DOI Listing

Publication Analysis

Top Keywords

fp-based biosensors
12
genetically encoded
8
fluorescent biosensors
8
biosensors
5
encoded fluorescent
4
biosensors quantitative
4
quantitative vivo
4
vivo imaging
4
imaging fluorescent
4
biosensors powerful
4

Similar Publications

Ranking Single Fluorescent Protein-Based Calcium Biosensor Performance by Molecular Dynamics Simulations.

J Chem Inf Model

December 2024

Faculty of Engineering and Natural Sciences, Sabanci University, Istanbul 34956, Turkey.

Genetically encoded fluorescent biosensors (GEFBs) have become indispensable tools for visualizing biological processes A typical GEFB is composed of a sensory domain (SD) that undergoes a conformational change upon ligand binding or enzymatic reaction; the SD is genetically fused with a fluorescent protein (FP). The changes in the SD allosterically modulate the chromophore environment whose spectral properties are changed. Single fluorescent (FP)-based biosensors, a subclass of GEFBs, offer a simple experimental setup; they are easy to produce in living cells, structurally stable, and simple to use due to their single-wavelength operation.

View Article and Find Full Text PDF

A genetically encoded fluorescent whole-cell biosensor for real-time detecting estrogenic activities in water samples.

J Hazard Mater

December 2024

State Key Laboratory of Pollution Control and Resource Reuse, School of Environment, Nanjing University, Nanjing 210023, PR China. Electronic address:

Real-time monitoring of estrogenic activity in the aquatic environment is a challenging task. Current biosensors face difficulties due to their limited response speed and environmental tolerance, especially for detecting wastewater, the major source of estrogenic compounds in aquatic environments. To address these difficulties, this study developed a single fluorescent protein (FP) -based whole-cell bacterial biosensor named ER-Light, which was achieved by inserting the sensing domain of the estrogen receptor (ER) into the FP Citrine and expressing it in the periplasm of Escherichia coli.

View Article and Find Full Text PDF

Development of fluorescence lifetime biosensors for ATP, cAMP, citrate, and glucose using the mTurquoise2-based platform.

Cell Rep Methods

November 2024

Laboratory for Cell Polarity Regulation, RIKEN Center for Biosystems Dynamics Research (BDR), Suita, Osaka 565-0874, Japan; Department of Cell Biology, Graduate School of Medicine, the University of Tokyo, Hongo, Tokyo 113-0033, Japan; Department of Physics, Graduate School of Science, the University of Tokyo, Hongo, Tokyo 113-0033, Japan; Universal Biology Institute (UBI), the University of Tokyo, Hongo, Tokyo 113-0033, Japan; Internatinonal Research Center for Neurointelligence (WPI-IRCN), the University of Tokyo, Hongo, Tokyo 113-0033, Japan. Electronic address:

Single-fluorescent protein (FP)-based FLIM (fluorescence lifetime imaging microscopy) biosensors can visualize intracellular processes quantitatively. They require a single wavelength for detection, which facilitates multi-color imaging. However, their development has been limited by the absence of a general design framework and complex screening processes.

View Article and Find Full Text PDF

In this study, we introduce a new separation of phases-based activity reporter of kinase (SPARK) for AMP-activated kinase (AMPK), named AMPK-SPARK, which reports the AMPK activation by forming bright fluorescent clusters. Furthermore, we introduce a dual reporter system, named GCaMP-AMPK-SPARK, by incorporating a single-fluorescent protein (FP)-based Ca biosensor, GCaMP6f, into our initial design, enabling simultaneous monitoring of Ca levels and AMPK activity. This system offers the essential quality of information by single-channel fluorescence microscopy without the need for coexpression of different biosensors and elaborate filter layouts to overcome spectral limitations.

View Article and Find Full Text PDF

The development of new or improved single fluorescent protein (FP)-based biosensors (SFPBs), particularly those with excitation and emission at near-infrared wavelengths, is important for the continued advancement of biological imaging applications. In an effort to accelerate the development of new SFPBs, we report modified transposons for the transposase-based creation of libraries of FPs randomly inserted into analyte binding domains, or vice versa. These modified transposons feature ends that are optimized to minimize the length of the linkers that connect the FP to the analyte binding domain.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!