Ionic reactions are the most common reactions used in chemical synthesis. In relatively low dielectric constant solvents (e.g., dichloromethane, toluene), ions usually exist as ion pairs. Despite the importance of counterions, a quantitative description of how the paired 'counterion' affects the reaction kinetic is still elusive. We introduce a general and quantitative model, namely transition-state expansion (TSE), that describes how the size of a counterion affects the transition-state structure and the kinetics of an ionic reaction. This model could rationalize the counterion effects in nucleophilic substitutions and gold-catalyzed enyne cycloisomerizations.
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http://dx.doi.org/10.1016/j.isci.2020.101593 | DOI Listing |
J Chem Phys
November 2024
Simons Center for Computational Physical Chemistry, New York University, New York, New York 10003, USA and Department of Chemistry, New York University, New York, New York 10003, USA.
Instanton theory relates the rate constant for tunneling through a barrier to the periodic classical trajectory on the upturned potential energy surface, whose period is τ = ℏ/(kBT). Unfortunately, the standard theory is only applicable below the "crossover temperature," where the periodic orbit first appears. This paper presents a rigorous semiclassical (ℏ → 0) theory for the rate that is valid at any temperature.
View Article and Find Full Text PDFChemphyschem
October 2024
Department of Chemistry, University of Minnesota, 207 Pleasant St., SE, Minneapolis, MN, 55455, USA.
The reaction of sulfur trioxide (SO) and thiobenzoic acid (CHCOSH) is investigated in the gas phase under supersonic jet conditions. Rotational spectroscopy of the parent and several isotopically substituted derivatives, in conjunction with DFT calculations at the M06-2X/6-311++G(3df,3pd) level of theory, identify the product as thiobenzoic sulfuric anhydride, CHC(=S)OSOOH. Single point CCSD(T)/CBS(D-T)//M06-2X/6-311++G(3df,3pd) calculations place the electronic energy of the product anhydride 114 kJ/mol lower than that of SO+CHCOSH at infinite separation.
View Article and Find Full Text PDFBiochemistry
October 2024
Redona Therapeutics (formerly Twentyeight-Seven Therapeutics), 490 Arsenal Way, Watertown, Massachusetts 02472, United States.
Oligoadenylate synthetase 1 (OAS1) catalyzes the dsRNA-dependent polymerization of ATP to form oligoadenylate, a second messenger of the innate immunity system. This paper reports kinetic and mechanistic studies of OAS1-catalyzed dimerization of ATP to form 2'-5'-diadenylate and pyrophosphate (PP), the first step in ATP polymerization. Major findings include the following: (1) Reaction progress curves for the production of PP are biphasic, characterized by a presteady-state lag followed by the linear, steady-state production of PP.
View Article and Find Full Text PDFPhys Chem Chem Phys
October 2024
IBM Quantum, IBM Research - Almaden, 650 Harry Road, San Jose, CA 95120, USA.
The simulation of chemical reactions is an anticipated application of quantum computers. Using a Diels-Alder reaction as a test case, in this study we explore the potential applications of quantum algorithms and hardware in investigating chemical reactions. Our specific goal is to calculate the activation barrier of a reaction between ethylene and cyclopentadiene forming a transition state.
View Article and Find Full Text PDFFood Chem
September 2024
Department of Chemistry, ITER, Siksha O Anusandhan Deemed to be University, Odisha, India. Electronic address:
This study examines the volumetric, viscometric and UV-vis characteristics of L-Citrulline in water and aqueous saccharides at atmospheric pressure across the whole concentration range and the absorber operating temperature range of 293.15 K -313.15 K.
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