Objectives: The () mutation is the commonest oncogenic drive mutation in lung adenocarcinoma (LUAD) and immunotherapy may be quite promising for -mutant LUAD. While the effects of tumor mutation burden (TMB) and copy number alteration (CNA) are poorly understood in this illness, our study aimed to explore the roles TMB and CNA play in the prediction of response to immune checkpoint inhibitor (ICI) therapy in advanced -mutant LUAD.
Methods: Mutation and clinical data were downloaded from cBioPortal. We evaluated mutation status and divided patients into different subgroups based on TMB and CNA cutoffs to investigate the predictive value of these biomarkers on ICI response.
Results: mutation with concurrent or mutations had higher TMB and CNA compared to mutation alone. The G12C and G > T mutation subgroups, with or co-mutation, also had higher TMB and CNA. We found that TMB and CNA were independently associated with progression-free survival (PFS) and durable clinical benefits (DCB); TMB was positively correlated with PFS ( = 0.0074) and DCB ( = 0.0008) while low CNA was associated with prolonged PFS ( = 0.0060) and DCB ( = 0.0018). However, TMB alone did not distinguish benefits among -mutant patients. Notably, when combining TMB and CNA, low TMB and high CNA revealed worse outcomes of ICI therapy (mPFS: 2.20m, = 0.0023; proportion of DCB: 24%, = 0.0001).
Conclusion: The combination of TMB and CNA provides more sensible and accurate prediction of ICI response than individual factors in -mutant LUAD. Moreover, low TMB and high CNA can be utilized as a potential biomarker to predict adverse outcome in -mutant LUAD.
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http://dx.doi.org/10.3389/fonc.2020.559896 | DOI Listing |
Eur J Cancer
November 2024
Institute of Pathology, Heidelberg University Hospital, Heidelberg, Germany; Centers for Personalized Medicine (ZPM), Germany; Translational Lung Research Center Heidelberg (TLRC), Member of the German Center for Lung Research (DZL), Heidelberg, Germany; German Cancer Consortium (DKTK), Germany. Electronic address:
Aging (Albany NY)
June 2024
Department of Orthopedic and Trauma Surgery, The First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi 530021, China.
T cells are the key to killing tumor cells. However, the exact mechanism of their role in cancer is not fully understood. Therefore, a comprehensive understanding of the role of T-cell proliferation regulatory genes in tumors is needed.
View Article and Find Full Text PDFMol Carcinog
September 2024
Department of Medical Oncology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
This study aimed to explore the clinical significance of genomics features including tumor mutation burden (TMB) and copy number alteration (CNA) for advanced EGFR mutant lung cancer. We retrospectively identified 1378 patients with advanced EGFR mutant lung cancer and next-generation sequencing tests from three cohorts. Multiple co-occurring genomics alternations occurred in a large proportion (97%) of patients with advanced EGFR mutant lung cancers.
View Article and Find Full Text PDFCancers (Basel)
February 2024
Beatrice Hunter Cancer Research Institute, Halifax, NS B3H 0A2, Canada.
Immune checkpoint blockade (ICB) benefits only a subset of advanced cancer patients, and predictive biomarkers for immunotherapy response are needed. Recently, copy number alteration (CNA) burden has been proposed to predict ICB resistance. We assessed this finding using the publicly accessible data for 1661 ICB-treated patients whose tumors were profiled by MSK-IMPACT, an approved targeted assay in clinical care.
View Article and Find Full Text PDFLung Cancer
January 2024
Department of Oncology, Shanghai Pulmonary Hospital, School of Medicine, Tongji University, Shanghai, PR China. Electronic address:
Objective: Lung cancer is classified into central and peripheral types based on the anatomic location. The present study aimed to explore the distinct patterns of genomic alterations between central- and peripheral-type non-small cell lung cancers (NSCLCs) with negative driver genes and identify potential driver genes and biomarkers to improve therapy strategies for NSCLC.
Methods: Whole-exome sequencing (WES) was performed with 182 tumor/control pairs of samples from 145 Chinese NSCLC patients without EGFR, ALK, or ROS1 alterations.
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