Transcriptional suppression of ribosomal DNA with phase separation.

Sci Adv

Genome Dynamics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.

Published: October 2020

AI Article Synopsis

  • The nucleolus is important for ribosomal RNA transcription but how this process is regulated within its liquid-like compartments is not well understood.
  • Researchers used advanced tracking methods to show that active RNA polymerase I (Pol I) clusters in the nucleolus can suppress transcription through phase separation.
  • A mutation in Pol I linked to a craniofacial disorder interferes with normal transcription by competing with functional Pol I, leading to changes in the nucleolus that further inhibit the process.

Article Abstract

The nucleolus is a nuclear body with multiphase liquid droplets for ribosomal RNA (rRNA) transcription. How rRNA transcription is regulated in the droplets remains unclear. Here, using single-molecule tracking of RNA polymerase I (Pol I) and chromatin-bound upstream binding factor (UBF), we reveal suppression of transcription with phase separation. For transcription, active Pol I formed small clusters/condensates that constrained rDNA chromatin in the nucleolus fibrillar center (FC). Treatment with a transcription inhibitor induced Pol I to dissociate from rDNA chromatin and to move like a liquid within the nucleolar cap that transformed from the FC. Expression of a Pol I mutant associated with a craniofacial disorder inhibited transcription by competing with wild-type Pol I clusters and transforming the FC into the nucleolar cap. The cap droplet excluded an initiation factor, ensuring robust silencing. Our findings suggest a mechanism of rRNA transcription suppression via phase separation of intranucleolar molecules governed by Pol I.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7556839PMC
http://dx.doi.org/10.1126/sciadv.abb5953DOI Listing

Publication Analysis

Top Keywords

phase separation
12
rrna transcription
12
rdna chromatin
8
nucleolar cap
8
transcription
7
pol
6
transcriptional suppression
4
suppression ribosomal
4
ribosomal dna
4
dna phase
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!