AI Article Synopsis

  • The study identified 131 ABC transporter genes in barley using bioinformatics and categorized them into eight subfamilies based on their similarities to rice genes.
  • Analysis of these genes revealed conserved motifs and significant diversity in aspects like transmembrane domains, exons, and amino acid properties, with overall non-specific tissue expression.
  • 15 genes showed varied expression responses to stress from drought, cadmium, and salt, suggesting the ABCB and ABCG subfamilies play important roles in barley's ability to respond to abiotic stress.

Article Abstract

Adenosine triphosphate-binding cassette transporters (ABC transporters) participate in various plant growth and abiotic stress responses. In the present study, 131 ABC genes in barley were systematically identified using bioinformatics. Based on the classification method of the family in rice, these members were classified into eight subfamilies (ABCA-ABCG, ABCI). The conserved domain, amino acid composition, physicochemical properties, chromosome distribution, and tissue expression of these genes were predicted and analyzed. The results showed that the characteristic motifs of the barley ABC genes were highly conserved and there were great diversities in the homology of the transmembrane domain, the number of exons, amino acid length, and the molecular weight, whereas the span of the isoelectric point was small. Tissue expression profile analysis suggested that ABC genes possess non-tissue specificity. Ultimately, 15 differentially expressed genes exhibited diverse expression responses to stress treatments including drought, cadmium, and salt stress, indicating that the ABCB and ABCG subfamilies function in the response to abiotic stress in barley.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7599588PMC
http://dx.doi.org/10.3390/plants9101281DOI Listing

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