Plant photosynthesis and growth are often limited by the activity of the CO-fixing enzyme Rubisco. The broad kinetic diversity of Rubisco in nature is accompanied by differences in the composition and compatibility of the ancillary proteins needed for its folding, assembly, and metabolic regulation. Variations in the protein folding needs of catalytically efficient red algae Rubisco prevent their production in plants. Here, we show this impediment does not extend to Rubisco from (Rubisco)- red-type Rubisco able to assemble in plant chloroplasts. In transplastomic tobLS lines expressing a codon optimized - operon, the messenger RNA (mRNA) abundance was ∼25% of transcript and Rubisco ∼40% the Rubisco content in WT tobacco. To mitigate the low activation status of Rubisco in tobLS (∼23% sites active under ambient CO), the metabolic repair protein Rca (-activase) was introduced via nuclear transformation. Rca production in the tobLS::X progeny matched endogenous tobacco Rca levels (∼1 µmol protomer·m) and enhanced Rubisco activation to 75% under elevated CO (1%, vol/vol) growth. Accordingly, the rate of photosynthesis and growth in the tobLS::X lines were improved >twofold relative to tobLS. Other tobacco lines producing Rubisco containing alternate diatom and red algae S-subunits were nonviable as CO-fixation rates () were reduced >95% and CO/O specificity impaired 30-50%. We show differences in hybrid and WT Rubisco biogenesis in tobacco correlated with assembly in advocating use of this bacterium to preevaluate the kinetic and chloroplast compatibility of engineered Rubisco, an isoform amenable to directed evolution.
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http://dx.doi.org/10.1073/pnas.2011641117 | DOI Listing |
Plant Cell Environ
December 2024
Department of Plant Sciences, University of California at Davis, Davis, California, USA.
Rubisco, the most prevalent protein on Earth, catalysers both a reaction that initiates C carbon fixation, and a reaction that initiates photorespiration, which stimulates protein synthesis. Regulation of the balance between these reactions under atmospheric CO fluctuations remains poorly understood. We have hypothesised that vascular plants maintain organic carbon-to-nitrogen homoeostasis by adjusting the relative activities of magnesium and manganese in chloroplasts to balance carbon fixation and nitrate assimilation rates.
View Article and Find Full Text PDFPlant Mol Biol
December 2024
Department of Crop and Soil Sciences, Washington State University, Pullman, WA, 99164, USA.
Heat stress affects various components of photosynthetic machinery of which Rubisco activation inhibition due to heat sensitive Rubisco activase (RCA) is the most prominent. Detailed comparison of RCA coding genes identified a tandem duplication event in the grass family lineage where the duplicated genes showed very different evolutionary pattern. One of the two genes showed high level of sequence conservation whereas the second copy, although present only 1.
View Article and Find Full Text PDFFront Plant Sci
December 2024
State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Ministry of Science and Technology, Chengdu, Sichuan, China.
Low solar irradiance reaching the canopy due to fog and heavy haze is a significant yield-limiting factor worldwide. However, how plants adapt to shade stress and the mechanisms underlying the reduction in leaf photosynthetic capacity and grain yield remain unclear. In this study (conducted during 2018-2021), we investigated the impact of light deprivation (60%) at the pre-anthesis and post-anthesis stages on leaf carboxylation efficiency, source-to-sink relationships, sucrose metabolism, and grain yield of wheat cultivars with contrasting shade tolerance.
View Article and Find Full Text PDFEnviron Microbiome
December 2024
Innovative Genomics Institute, University of California, Berkeley, CA, 94720, USA.
Background: Underground research laboratories (URLs) provide a window on the deep biosphere and enable investigation of potential microbial impacts on nuclear waste, CO and H stored in the subsurface. We carried out the first multi-year study of groundwater microbiomes sampled from defined intervals between 140 and 400 m below the surface of the Horonobe and Mizunami URLs, Japan.
Results: We reconstructed draft genomes for > 90% of all organisms detected over a four year period.
New Phytol
December 2024
Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Global demand for food may rise by 60% mid-century. A central challenge is to meet this need using less land in a changing climate. Nearly all crop carbon is assimilated through Rubisco, which is catalytically slow, reactive with oxygen, and a major component of leaf nitrogen.
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