What Determines the Selectivity of Arginine Dihydroxylation by the Nonheme Iron Enzyme OrfP?

Chemistry

Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.

Published: January 2021

The nonheme iron enzyme OrfP reacts with l-Arg selectively to form the 3R,4R-dihydroxyarginine product, which in mammals can inhibit the nitric oxide synthase enzymes involved in blood pressure control. To understand the mechanisms of dioxygen activation of l-Arg by OrfP and how it enables two sequential oxidation cycles on the same substrate, we performed a density functional theory study on a large active site cluster model. We show that substrate binding and positioning in the active site guides a highly selective reaction through C -H hydrogen atom abstraction. This happens despite the fact that the C -H and C -H bond strengths of l-Arg are very similar. Electronic differences in the two hydrogen atom abstraction pathways drive the reaction with an initial C -H activation to a low-energy σ-pathway, while substrate positioning destabilizes the C -H abstraction and sends it over the higher-lying π-pathway. We show that substrate and monohydroxylated products are strongly bound in the substrate binding pocket and hence product release is difficult and consequently its lifetime will be long enough to trigger a second oxygenation cycle.

Download full-text PDF

Source
http://dx.doi.org/10.1002/chem.202004019DOI Listing

Publication Analysis

Top Keywords

nonheme iron
8
iron enzyme
8
active site
8
substrate binding
8
hydrogen atom
8
atom abstraction
8
substrate
5
determines selectivity
4
selectivity arginine
4
arginine dihydroxylation
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!