Characterization of inthomycin biosynthetic gene cluster revealing new insights into carboxamide formation.

Chin J Nat Med

State Key Laboratory of Phytochemistry and Plant Resources in West China, and CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China. Electronic address:

Published: September 2020

AI Article Synopsis

  • - Inthomycins are a type of antibiotic derived from a bacteria called Streptomyces pactum L8, characterized by their unique chemical structure featuring a carboxamide group and a triene chain.
  • - The study focused on isolating Inthomycin B and two new related compounds, along with identifying the gene cluster responsible for their biosynthesis.
  • - A proposed formation mechanism for the carboxamide part of inthomycins suggests that a specific gene deletion in the biosynthesis process triggered an oxidative release that helps develop this chemical group.

Article Abstract

Inthomycins are polyketide antibiotics which contain a terminal carboxamide group and a triene chain. Inthomycin B (1) and its two new analogues 2 and 3 were isolated from the crude extract of Streptomyces pactum L8. Identification of the gene cluster for inthomycin biosynthesis as well as the N-labeled glycine incorporation into inthomycins are described. Combined with the gene deletion of the rare P450 domain in the NRPS module, a formation mechanism of carboxamide moiety in inthomycins was proposed via an oxidative release of the assembly chain assisted by the P450 domain.

Download full-text PDF

Source
http://dx.doi.org/10.1016/S1875-5364(20)60006-1DOI Listing

Publication Analysis

Top Keywords

gene cluster
8
p450 domain
8
characterization inthomycin
4
inthomycin biosynthetic
4
biosynthetic gene
4
cluster revealing
4
revealing insights
4
insights carboxamide
4
carboxamide formation
4
formation inthomycins
4

Similar Publications

Expression of 11 genes of the Hox cluster (SiHox1, 2, 3, 5, 6, 7, 8, 9/10, 11/13a, 11/13b, and 11/13c) was assessed in the sea urchin Strongylocentrotus intermedius at early developmental stages, including the blastula (13 h post fertilization (hpf)), gastrula (35 hpf), prism (46 hpf), and pluteus (4 and 9 days post fertilization (dpf)) stages. Expression of SiHox7, 11/13b, and 11/13c was observed at the blastula stage; early activation of 11/13c was detected for the first time in regular sea urchins. The expression level was very low at the gastrula and prism stages.

View Article and Find Full Text PDF

Xylindein is a blue-green pigment produced by the fungi and Its stunning color and optoelectronic properties make xylindein valuable for textiles and as a natural semiconductor material. However, producing xylindein from culture broths remains challenging because of the slow growth of the species and the poor solubility of xylindein in organic solvents. An alternative production route for obtaining pure xylindein is heterologous expression of the xylindein biosynthetic genes.

View Article and Find Full Text PDF

The biosynthesis of mupirocin, a clinically significant antibiotic produced by sp. NCIMB 10586, is activated by the -acyl homoserine lactone (AHL) MupR/I quorum sensing (QS) system. However, to date, limited research has focused on the influence of global regulators such as the GacS/A two-component system (TCS) on the MupR/I QS system or mupirocin biosynthesis.

View Article and Find Full Text PDF

Pediatric high-grade gliomas (pHGGs) are the most aggressive brain tumors in children, necessitating innovative therapies to improve outcomes. Unlike adult gliomas, recent research reveals that childhood gliomas have distinct biological features, requiring specific treatment strategies. Here, we focused on deciphering unique genetic dependencies specific to childhood gliomas.

View Article and Find Full Text PDF

Background: Recent years have seen persistently poor prognoses for glioma patients. Therefore, exploring the molecular subtyping of gliomas, identifying novel prognostic biomarkers, and understanding the characteristics of their immune microenvironments are crucial for improving treatment strategies and patient outcomes.

Methods: We integrated glioma datasets from multiple sources, employing Non-negative Matrix Factorization (NMF) to cluster samples and filter for differentially expressed metabolic genes.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!