The isotopic molecular envelopes due to stable isotopes for most elements were a staple of mass spectrometry since its origins, often leveraged to identify and quantify compounds. However, all isomers share one MS envelope. As the molecular motion in media also depends on the isotopic composition, separations such as liquid chromatography (LC) and ion mobility spectrometry (IMS) must also feature isotopic envelopes. These were largely not observed because of limited resolution, except for the (structurally uninformative) shifts in LC upon H/D exchange. We recently found the isotopic shifts in FAIMS for small haloanilines (∼130-170 Da) to hinge on the halogen position, opening a novel route to isomer characterization. Here, we extend the capability to heavier species: dibromoanilines (DBAs, ∼250 Da) and tribromoanilines (TBAs, ∼330 Da). The C shifts for DBAs and TBAs vary across isomers, some changing sign. While Br shifts are less specific, the 2-D C/Br shifts unequivocally differentiate all isomers. The trends for DBAs track those for dichloroanilines, with the C shift order preserved for most isomers. The peak broadening due to merged isotopomers is also isomer-specific. The absolute shifts for TBAs are smaller than those for lighter haloanilines, but differentiate isomers as well because of compressed uncertainties. These results showcase the feasibility of broadly distinguishing isomers in the more topical ∼200-300 Da range using the isotopic shifts in IMS spectra.
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J Proteome Res
January 2025
Department of Chemistry, University of Texas at Austin, Austin, Texas 78712, United States.
Proteo-SAFARI is a shiny application for fragment assignment by relative isotopes, an R-based software application designed for identification of protein fragment ions directly in the / domain. This program provides an open-source, user-friendly application for identification of fragment ions from a candidate protein sequence with support for custom covalent modifications and various visualizations of identified fragments. Additionally, Proteo-SAFARI includes a nonnegative least-squares fitting approach to determine the contributions of various hydrogen shifted fragment ions ( + 1, + 1, - 1, - 2) observed in UVPD mass spectra which exhibit overlapping isotopic distributions.
View Article and Find Full Text PDFPLoS One
January 2025
UMR CRBE (Center for Research on Biodiversity and Environment), CNRS5300, IRD, INP, UPS, Université Paul Sabatier, Toulouse, France.
The introduction of non-native fish species into new environments has raised global concerns due to potential ecological impacts on recipient ecosystems. A previous study focusing on the introduced fish species Arapaima gigas in Bolivian Amazon waters showed that its isotopic niche significantly overlapped with most co-occurring native fish species, suggesting potential competition. To evaluate this hypothesis, we extended here the investigation by comparing the trophic position and isotopic niche width of eleven abundant native fish species inhabiting both colonized and non-colonized floodplain lakes.
View Article and Find Full Text PDFNature
January 2025
Institute of Arctic and Alpine Research, University of Colorado, Boulder, CO, USA.
Understanding the causes of past atmospheric methane (CH) variability is important for characterizing the relationship between CH, global climate and terrestrial biogeochemical cycling. Ice core records of atmospheric CH contain rapid variations linked to abrupt climate changes of the last glacial period known as Dansgaard-Oeschger (DO) events and Heinrich events (HE). The drivers of these CH variations remain unknown but can be constrained with ice core measurements of the stable isotopic composition of atmospheric CH, which is sensitive to the strength of different isotopically distinguishable emission categories (microbial, pyrogenic and geologic).
View Article and Find Full Text PDFSci Adv
January 2025
Lamont-Doherty Earth Observatory, Columbia University, Palisades, NY 10964, USA.
The Antarctic Circumpolar Current (ACC) dominates the transfer of heat, salt, and tracers around the Southern Ocean (SO), driving the upwelling of carbon-rich deep waters around Antarctica. Paleoclimate reconstructions reveal marked variability in SO circulation; however, few records exist coupling quantitative reconstructions of ACC flow with tracers of SO upwelling spanning multiple Pleistocene glacial cycles. Here, we reconstruct near-bottom flow speed variability in the SO south of Africa, revealing systematic glacial-interglacial variations in the strength and/or proximity of ACC jets.
View Article and Find Full Text PDFSci Rep
December 2024
Ocean Sciences Department, University of California, Santa Cruz, Santa Cruz, CA, USA.
Stable isotopes of carbon (δC) and nitrogen (δN) are commonly employed to reconstruct past change in marine ecosystems and nutrient cycling. However, multiple biogeochemical and physical drivers govern spatiotemporal variability of these isotopic signals, particularly in dynamic coastal systems, complicating interpretation. Here, we coupled a modern multi-year (2010-2019) δC and δN isoscape record from intertidal mussels (Mytilus californianus) with high-resolution ocean model output and satellite chlorophyll-a observations in the California Current System (32°-43° N) to identify major drivers of isotopic variability.
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