The complete genomic sequence of achyranthes virus A (AcVA), from an Achyranthes bidentata Blume plant in South Korea, was determined. The genomic RNA has 9491 nucleotides (nt), excluding the 3'-terminal poly(A) tail and contains an open reading frame typical of members of the genus Potyvirus, family Potyviridae, encoding a large putative polyprotein of 3103 amino acids (aa). Pairwise comparisons showed that the AcVA sequence shares 47.81-57.78% nt sequence identity at the complete genome level, 41.89-56.41% aa sequence identity at the polyprotein level, and 50-63.8% aa sequence identity at the coat protein level with other members of genus Potyvirus. These pairwise comparison values are below the species demarcation cutoff for the family Potyviridae. Our results therefore suggest that this virus should be regarded as a novel member of the genus Potyvirus, tentatively named "achyranthes virus A".

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00705-020-04778-1DOI Listing

Publication Analysis

Top Keywords

genus potyvirus
16
sequence identity
12
complete genome
8
achyranthes virus
8
novel member
8
member genus
8
members genus
8
family potyviridae
8
sequence
6
genome sequence
4

Similar Publications

Potyvirus-Based Vectors for Heterologous Gene Expression in Plants.

Viruses

December 2024

Department of Virus Ecology, Institute of Virology, Biomedical Research Center of the Slovak Academy of Sciences, Dubravska Cesta 9, 845 05 Bratislava, Slovakia.

Over the past two decades, plant viral vectors have emerged as a powerful tool for the production of recombinant proteins in plants. Among the different plant viruses engineered to carry foreign genes of interest in their genomes, potyviruses have gained attention due to their polyprotein expression strategy and broad host range. To date, at least eleven different species belonging to the genus have been used for heterologous gene expression in both their natural and experimental hosts.

View Article and Find Full Text PDF

Development of an immunodiagnostic assay for the detection of .

Turk J Biol

August 2024

Department of Agricultural Sciences and Technology, Atta-ur-Rahman School of Applied Biosciences, National University of Sciences and Technology, Islamabad, Pakistan.

Background/aim: (SCMV; genus and family ), poses a significant threat to global sugarcane cultivars, including those in Pakistan. The aim of this study was to develop a rapid and effective diagnostic tool for detection of SCMV, enabling timely implementation of control measures to mitigate potential yield losses.

Materials And Methods: The study focused on the in silico analysis, physicochemical properties, immunogenicity, and subcellular localization of the SCMV coat protein (CP).

View Article and Find Full Text PDF

Faba bean (Vicia faba L.) is the fourth most cultivated temperate legume (Lyu et al., 2021).

View Article and Find Full Text PDF

Plant viruses need host factors to complete their life cycle. The eukaryotic translation initiation factor 4E (eIF4E) and its isoforms are the host factors essential for infection by plant viruses in the genus Potyvirus. The present study describes the characterization of eIF4E gene in banana cultivar Nendran, and its interaction with the viral genome-linked protein (VPg) of banana bract mosaic virus (BBrMV).

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!