The Gram-Charlier temperature factor formalism has been applied to a set of accurate low-temperature data on bis(pyridine)(meso-tetraphenylporphinato)iron(II), and to a theoretical set of static structure factors on the hexaaquairon(II) ion. The refinements are compared with the multipole treatment for atomic asphericity due to chemical bonding. In a treatment of the experimental data in which only the iron atom asphericity is considered, the 'thermal motion' formalism is as efficient as the multipole formalism in accounting for the observations. It is slightly less efficient when applied to the static theoretical data, though model maps based on the two treatments are remarkably similar. A high-order Gram-Charlier refinement of the porphyrin data, followed by a multipole refinement of all data with the Gram-Charlier parameters initially fixed, and later varied, shows that simultaneous refinement of anharmonic and aspherical effects is possible, though the resulting separation may not be accurate. A combined Gram-Charlier multipole refinement on the static data, however, leads to non-significant thermal parameters. It is concluded that the statistical Gram-Charlier formalism is remarkably successful in representing bonding effects in the valence charge density if these are not specifically accounted for in the scattering formalism. Statistical anharmonic thermal motion formalisms should only be used for X-ray data analysis in combination with a formalism accounting for the effect of bonding on the atomic charge density.
Download full-text PDF |
Source |
---|---|
http://dx.doi.org/10.1107/s0108767387012558 | DOI Listing |
Acta Crystallogr B Struct Sci Cryst Eng Mater
June 2019
Institut für Anorganische Chemie, Universität Göttingen, Tammannstrasse 4, 37077 Göttingen, Germany.
The quality of various approximation methods for modelling anisotropic displacement parameters (ADPs) for hydrogen atoms was investigated in a comparative study. A multipole refinement was performed against high-resolution single crystal X-ray data of 9-diphenylthiophosphoranylanthracene (SPAnH) and 9,10-bis-diphenylthiophosphoranylanthracene·toluene (SPAnPS). Hydrogen-atom parameters and structural properties derived from our collected neutron data sets were compared with those obtained from the SHADE-server, the software APD-Toolkit based on the invariom database, the results from Hirshfeld atom refinement conducted in the OLEX2 GUI (HARt), and the results of anisotropic hydrogen refinement within XD2016.
View Article and Find Full Text PDFJ Phys Chem A
January 2013
Institut für Anorganische Chemie, Universität Göttingen, Tammannstrasse 4, 37077 Göttingen, Germany.
In the charge density study of 9-diphenylthiophosphinoylanthracene the thermal motion of several atoms needed an anharmonic description via Gram-Charlier coefficients even for data collected at 15 K. As several data sets at different temperatures were measured, this anharmonic model could be proved to be superior to a disorder model. Refinements against theoretical data showed the resemblance of an anharmonic model and a disorder model with two positions very close to each other (~0.
View Article and Find Full Text PDFActa Crystallogr B
June 2010
Chemistry Department, University at Buffalo, SUNY, Buffalo, NY 14260-3000, USA.
The charge density of the title compound was determined at 90 K, using a spherical crystal of 150 microm diameter. The proper treatment of the Zn atom in the pseudo-tetrahedral environment is considered in detail. A satisfactory refinement is only obtained when anharmonic Gram-Charlier parameters are included as variables in the refinement.
View Article and Find Full Text PDFActa Crystallogr A
November 2003
Centre for Crystallographic Studies, Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark.
Difficulties encountered in modelling the scattering of fluorine in organic compounds have been investigated through refinements of accurate X-ray and neutron diffraction data measured on tetrafluoroterephthalonitrile, TFT, at 122.4 K. Multipole refinements led to a highly contracted octopole on fluorine.
View Article and Find Full Text PDFActa Crystallogr B
August 2000
Chemistry Department, University of Toledo, OH 43606, USA.
The atomic interactions and anharmonicity of atomic displacements in the virtual ferroelectric KTaO3, potassium tantalate, have been studied using accurate single-crystal X-ray diffraction at room temperature. The multipole analysis of electron density and Gram-Charlier series description of anharmonic atomic displacements allowed us to perform a quantitative analysis of the chemical bonding and atomic motion in this crystal. Closed-shell interactions between Ta-O and K-O pairs of atoms were found, while no interaction was observed for the Ta-K and O-O atomic pairs.
View Article and Find Full Text PDFEnter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!