The structure and conductivity of AOT (sodium bis(2-ethylhexyl) sulfosuccinate) solutions (2.5 × 10 -2.5 × 10 M) in n-hexadecane-chloroform mixture at the chloroform concentration from 50 to 100 vol% were studied. The diffusion ordered spectroscopy NMR study revealed that in the indicated range, the observed hydrodynamic diameter of micelles depends only on the AOT concentration and does not depend on the chloroform content. Molar fractions of free AOT molecules and those aggregated into micelles were calculated using the Lindman's law: at concentrations above 2.5 × 10 М, the solutions contain mostly the micelles, whereas at concentrations below 2.5 × 10 M, the solutions contain AOT molecules. The transition region contains both the AOT molecules and the micelles. Conductivity measurements were used to determine free charge carriers in the bulk of solutions and their contributions to conductivity.
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http://dx.doi.org/10.1002/elps.202000085 | DOI Listing |
STAR Protoc
December 2024
Howard Hughes Medical Institute, Cornell University, Ithaca, NY 14853, USA; Physics Department & LASSP, Cornell University, Ithaca, NY 14853, USA. Electronic address:
For single-molecule studies requiring surface anchoring of biomolecules, poorly passivated surfaces can result in alterations of biomolecule structure and function that lead to artifacts. Here, we present a surface passivation assay for single-molecule studies of chromatin and topoisomerase II. We detail steps for preparing a nucleosome array and hydrophobic nitrocellulose-coated flow cell.
View Article and Find Full Text PDFSci Adv
December 2024
Howard Hughes Medical Institute, Cornell University, Ithaca, NY 14853, USA.
The angular optical trap (AOT) is a powerful technique for measuring the DNA topology and rotational mechanics of fundamental biological processes. Realizing the full potential of the AOT requires rapid torsional control of these processes. However, existing AOT quartz cylinders are limited in their ability to meet the high rotation rate requirement while minimizing laser-induced photodamage.
View Article and Find Full Text PDFChemphyschem
December 2024
Instituto para el desarrollo agroindustrial y de la salud (IDAS), (CONICET - UNRC), Departamento de Química, Universidad Nacional de Río Cuarto, Agencia Postal # 3. C.P, X5804BYA, Río Cuarto, Argentina.
In this study, we systematically explored the characteristics of dimethyl carbonate (DMC)/sodium 1,4-bis-2-ethylhexylsulfosuccinate (AOT) reverse micelles (RMs) in the presence of water using dynamic light scattering (DLS), proton nuclear magnetic resonance (H NMR), and molecular probes. DMC, a biocompatible solvent, enables the formulation of AOT RMs without the need for a co-surfactant. DLS revealed that as the water content increased, the droplet sizes grew larger.
View Article and Find Full Text PDFbioRxiv
October 2024
Department of Physics & LASSP, Cornell University, Ithaca, NY 14853, USA.
During DNA replication, the replisome must rotate relative to the DNA substrate, generating supercoiling that must be partitioned in front of or behind the replisome. Supercoiling partitioned behind the replisome may intertwine (or braid) daughter DNA molecules and restrict chromosome segregation. Supercoiling partitioning and torsional resistance at the replisome should depend on the geometry of the two daughter DNA molecules, determined by their end separations.
View Article and Find Full Text PDFbioRxiv
September 2024
Howard Hughes Medical Institute, Cornell University, Ithaca, NY 14853, USA.
The angular optical trap (AOT) is a powerful technique for measuring the DNA topology and rotational mechanics of fundamental biological processes. Realizing the full potential of the AOT requires rapid torsional control of these processes. However, existing AOT quartz cylinders are limited in their ability to meet the high rotation rate requirement while minimizing laser-induced photodamage.
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