The design and construction of crystalline protein arrays to selectively assemble ordered nanoscale materials have potential applications in sensing, catalysis, and medicine. Whereas numerous designs have been implemented for the bottom-up construction of protein assemblies, the generation of artificial functional materials has been relatively unexplored. Enzyme-directed post-translational modifications are responsible for the functional diversity of the proteome and, thus, could be harnessed to selectively modify artificial protein assemblies. In this study, we describe the use of phosphopantetheinyl transferases (PPTases), a class of enzymes that covalently modify proteins using coenzyme A (CoA), to site-selectively tailor the surface of designed, two-dimensional (2D) protein crystals. We demonstrate that a short peptide (ybbR) or a molecular tag (CoA) can be covalently tethered to 2D arrays to enable enzymatic functionalization using Sfp PPTase. The site-specific modification of two different protein array platforms is facilitated by PPTases to afford both small molecule- and protein-functionalized surfaces with no loss of crystalline order. This work highlights the potential for chemoenzymatic modification of large protein surfaces toward the generation of sophisticated protein platforms reminiscent of the complex landscape of cell surfaces.
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http://dx.doi.org/10.1021/acs.biochem.0c00363 | DOI Listing |
Sci Rep
January 2025
Department of Electrical Power, Adama Science and Technology University, Adama, 1888, Ethiopia.
Although the Transformer architecture has established itself as the industry standard for jobs involving natural language processing, it still has few uses in computer vision. In vision, attention is used in conjunction with convolutional networks or to replace individual convolutional network elements while preserving the overall network design. Differences between the two domains, such as significant variations in the scale of visual things and the higher granularity of pixels in images compared to words in the text, make it difficult to transfer Transformer from language to vision.
View Article and Find Full Text PDFJ Contam Hydrol
January 2025
College of Civil Engineering and Architecture, Zhejiang University, Hangzhou 310058, China. Electronic address:
Polymer material (PM) is a novel vertical barrier material, demonstrated to be effective in impeding pollutants. However, the associated transport research is limited. This study aims to develop an analytical solution for two-dimensional transport of organic contaminant in the PM-enhanced composite cutoff wall (CCW) system, where the variable substitution and Fourier transform methods are used.
View Article and Find Full Text PDFBioinformatics
January 2025
Section of Bioinformatics, Division of Systems Medicine, Department of Metabolism, Digestion and Reproduction, Faculty of Medicine, Imperial College London, London, W12 0NN, United Kingdom.
Unlabelled: Metabolomics extensively utilizes Nuclear Magnetic Resonance (NMR) spectroscopy due to its excellent reproducibility and high throughput. Both one-dimensional (1D) and two-dimensional (2D) NMR spectra provide crucial information for metabolite annotation and quantification, yet present complex overlapping patterns which may require sophisticated machine learning algorithms to decipher. Unfortunately, the limited availability of labeled spectra can hamper application of machine learning, especially deep learning algorithms which require large amounts of labelled data.
View Article and Find Full Text PDFSensors (Basel)
January 2025
Department of Electrical Engineering, Southeast University, Nanjing 210096, China.
The electromagnetic characteristics of a single-phase permanent magnet linear oscillation actuator are analyzed by the finite element method. Firstly, the basic structure and operation principle of the linear oscillation actuator are introduced. The internal stator slot and arc tooth are used to reduce the detent force.
View Article and Find Full Text PDFSensors (Basel)
January 2025
Yunnan Earthquake Agency, Kunming 650224, China.
The strong motion records collected in full-scale structures provide the ultimate evidence of how real structures, in situ, respond to earthquakes. This paper presents a novel method for visualization, in three dimensions (3D), of the collective motion by a dense array of sensors in a building. The method is based on one- and two-dimensional biharmonic spline interpolation of the motion recorded by multiple sensors on the same or multiple floors.
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