High hydrostatic pressure (HHP) batch cultivation of a model extremophile, type strain VC-16, was performed to explore how elevated pressures might affect microbial growth and physiology in the deep marine biosphere. Though commonly identified in high-temperature and high-pressure marine environments (up to 2-5 km below sea level, 20-50 MPa pressures), growth at elevated pressure has not been characterized previously. Here, exponential growth of was observed up to 60 MPa when supported by the heterotrophic metabolism of lactate oxidation coupled to sulfate reduction, and up to 40 MPa for autotrophic CO fixation coupled to thiosulfate reduction via H. Maximum growth rates for this heterotrophic metabolism were observed at 20 MPa, suggesting that is a moderate piezophile under these conditions. However, only piezotolerance was observed for autotrophy, as growth rates remained nearly constant from 0.3 to 40 MPa. Experiments described below show that continues both heterotrophic sulfate reduction and autotrophic thiosulfate reduction nearly unaffected by increasing pressure up to 30 MPa and 40 MPa, respectively. As these pressures encompass a variety of subsurface marine environments, serves as a model extremophile for exploring the effects of elevated pressure on microbial metabolisms in the deep subsurface. Further, these results exemplify the need for high-pressure cultivation of deep-sea and subsurface microorganisms to better reflect physiological conditions.
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http://dx.doi.org/10.3389/fmicb.2020.01023 | DOI Listing |
Int J Mol Sci
December 2024
School of Mathematical Sciences, Nankai University, Tianjin 300071, China.
Promoters, as core elements in the regulation of gene expression, play a pivotal role in genetic engineering and synthetic biology. The accurate prediction and optimization of promoter strength are essential for advancing these fields. Here, we present the first promoter strength database tailored to , an extremophilic microorganism, and propose a novel promoter design and prediction method based on generative adversarial networks (GANs) and multi-model fusion.
View Article and Find Full Text PDFExtremophiles
December 2024
School of Life Sciences, University of Nevada Las Vegas, Las Vegas, USA.
Among the many ice-binding proteins (IBPs) found in microorganisms (bacteria, archaea, fungi and algae), the canonical DUF3494 beta-barrel type is the most common. Until now, little variation has been found in this structure: an initial coil leads into an alpha helix that directs the following coils into a reverse stack, with the final coil ending up next to the initial coil. Here, I show that there exist many bacterial proteins whose AlphaFold-predicted structures deviate from the DUF3494 structure so that they are not recognized as belonging to an existing DUF or Pfam family.
View Article and Find Full Text PDFJ Biol Chem
December 2024
Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China. Electronic address:
Chem Biodivers
December 2024
Departamento de Microbiologia, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil.
Metabolites isolated from Penicillium palitans, obtained from deep sea sediments in the maritime Antarctica, were investigated for phytotoxic and antifungal activities. The fungus was submitted to solid state fermentation, and its crude extract was produced. Chromatographic separations of the P.
View Article and Find Full Text PDFProtoplasma
December 2024
Laboratory of Extremophile Plants, Centre of Biotechnology of Borj-Cedria, Hammam-Lif, Tunisia.
Phosphorus (P) is a macronutrient that plays a crucial role in critical plant functions. Phosphate transporters (PHTs) ensure the acquisition and translocation of Pi in the plant, thereby playing a key role in maintaining normal plant growth under Pi deficiency conditions. In Brachypodium distachyon, the grass model system, the function of individual PHT genes, remains largely unknown.
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