The iron-containing protein neuroglobin (Ngb) involved in the transport of oxygen is generally considered the precursor of all animal globins. In this report, we studied the structure of Ngb of the cold-water sponge Halisarca dujardinii. In sponges, the oldest multicellular organisms, the Ngb gene contains three introns. In contrast to human Ngb, its promoter contains a TATA-box, rather than CG-rich motifs. In sponges, Ngb consists of 169 amino acids showing rather low similarity with its mammalian orthologues. It lacks Glu and Arg residues in positions required for prevention of hypoxia-related apoptosis. Nevertheless, Ngb contains both proximal and distal conserved heme-biding histidines. The primary structure of H. dujardinii neuroglobin predicted by sequencing was confirmed by mass-spectrometry analysis of recombinant Ngb expressed in E. coli. The high level of Ngb expression in sponge tissues suggests its possible involvement in the gas metabolism and presumably in other key metabolic processes in H. dujardinii.
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http://dx.doi.org/10.31857/S0026898420030039 | DOI Listing |
ISME Commun
January 2024
Department of Fisheries and Oceans Canada, Bedford Institute of Oceanography, Dartmouth, NS B2Y 4A2, Canada.
Knowledge of spatial distribution patterns of biodiversity is key to evaluate and ensure ocean integrity and resilience. Especially for the deep ocean, where in situ monitoring requires sophisticated instruments and considerable financial investments, modeling approaches are crucial to move from scattered data points to predictive continuous maps. Those modeling approaches are commonly run on the macrobial level, but spatio-temporal predictions of host-associated microbiomes are not being targeted.
View Article and Find Full Text PDFThe deep sea, defined as ocean depths below 200 m, encompasses vast and largely unexplored habitats, such as abyssal plains, hydrothermal vents, cold seeps, and ocean trenches. This environment supports a remarkable diversity of life forms adapted to extreme conditions, including high pressure, low temperatures, and complete darkness. The Collection highlights the importance of these ecosystems and the unique adaptations of the organisms inhabiting these extreme environments, ranging from invertebrates like corals and sponges to diverse microbial communities.
View Article and Find Full Text PDFPorcine Health Manag
October 2024
Department of Clinical Sciences, Swedish University of Agricultural Sciences, 750 07, Uppsala, Sweden.
Background: All-in, all-out with strict hygienic routines is necessary in modern pig production. Furthermore, a standardised, validated method is needed to quantitatively control the effect of these hygiene protocols. This study aimed to establish a reproducible and reliable sampling method to assess cleaning of the pig pen.
View Article and Find Full Text PDFPeerJ
October 2024
Institute of Integrated Science and Technology, Nagasaki University, Nagasaki, Japan.
R Soc Open Sci
May 2024
School of Biodiversity, One Health & Veterinary Medicine, University of Glasgow, Glasgow G61 1QH, UK.
Advancing imaging technologies are drastically increasing the rate of marine video and image data collection. Often these datasets are not analysed to their full potential as extracting information for multiple species is incredibly time-consuming. This study demonstrates the capability of the open-source interactive machine learning tool, RootPainter, to analyse large marine image datasets quickly and accurately.
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