Describing temporal changes in phytoplankton communities is complicated owing to (i) multivariate environmental drivers, (ii) inter-specific relationships, and (iii) various species. With long-term research data from the lower Nakdong River from 1993 to 2016, we examined the temporal changes at two scales-episodic (from weekly to monthly) and long-term (yearly)-and screened the potential environmental drivers. Phytoplankton community component patterns were modeled with the drivers as covariates, using multivariate autoregressive state-space (MARSS) models, to assess their response to environmental drivers and biotic interactions. We assumed that compared to taxonomic classification, functional classification would obtain a better identification of community response to temporal variability. Over 24 years, the succession patterns of the dominant taxonomic and functional groups decreased in diversity, with the greatest decreases in biomass of Bacillariophyceae and group D (mainly the diatom Stephanodiscus hantzschii), and coincided with the introduction of group H1 (dinitrogen-fixing nostocaleans). The potential drivers for these changes were precipitation, water level, and total nitrogen (TN) for taxonomic groups and TN, total phosphorus, and euphotic zone depth for functional groups. The results of the MARSS model and temporal trends for each driver indicated that the increases in the water level and light availability were mostly related with the taxonomic and functional groups, respectively. The model for functional groups proposed a total of 24 significant inter-group relationships, where five relationships supported the succession patterns of dominant groups in the Nakdong River. Combined with the effects of increased light availability, a positive relationship between groups H1 and M (mainly Cyanobacteria and Microcystis aeruginosa) appears to induce cyanobacterial bloom development over a long period. These results can be fundamental information for river system management concerning the resulting cascading effects of changes in environmental drivers and inter-group relationships on the phytoplankton community composition.

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