AI Article Synopsis
- Metaproteomics, which examines the collective proteins of microbial communities, lacks accessible data analysis pipelines despite its growth in popularity.
- The article discusses integrating two key tools, MetaProteomeAnalyzer and PeptideShaker, with Unipept for a streamlined analysis process.
- This integration creates efficient end-to-end pipelines that facilitate everything from database searches to taxonomic and functional annotations of protein data.
Article Abstract
Although metaproteomics, the study of the collective proteome of microbial communities, has become increasingly powerful and popular over the past few years, the field has lagged behind on the availability of user-friendly, end-to-end pipelines for data analysis. We therefore describe the connection from two commonly used metaproteomics data processing tools in the field, MetaProteomeAnalyzer and PeptideShaker, to Unipept for downstream analysis. Through these connections, direct end-to-end pipelines are built from database searching to taxonomic and functional annotation.
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| http://dx.doi.org/10.1021/acs.jproteome.0c00136 | DOI Listing |
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