Severity: Warning
Message: file_get_contents(https://...@pubfacts.com&api_key=b8daa3ad693db53b1410957c26c9a51b4908&a=1): Failed to open stream: HTTP request failed! HTTP/1.1 429 Too Many Requests
Filename: helpers/my_audit_helper.php
Line Number: 176
Backtrace:
File: /var/www/html/application/helpers/my_audit_helper.php
Line: 176
Function: file_get_contents
File: /var/www/html/application/helpers/my_audit_helper.php
Line: 250
Function: simplexml_load_file_from_url
File: /var/www/html/application/helpers/my_audit_helper.php
Line: 1034
Function: getPubMedXML
File: /var/www/html/application/helpers/my_audit_helper.php
Line: 3152
Function: GetPubMedArticleOutput_2016
File: /var/www/html/application/controllers/Detail.php
Line: 575
Function: pubMedSearch_Global
File: /var/www/html/application/controllers/Detail.php
Line: 489
Function: pubMedGetRelatedKeyword
File: /var/www/html/index.php
Line: 316
Function: require_once
In projection-based embedding (PbE) the subsystem partitioning of a chemical system is based on localized orbitals. We demonstrate how the localization step can lead to inconsistent orbital spaces along reaction paths, with severe consequences for reaction barriers and energies. We propose an orbital alignment procedure that resolves this problem without manual input. The usefulness of this alignment is demonstrated for a reaction benchmark set in combination with a direct orbital selection approach to automatize PbE calculations of double hybrid-in-nonhybrid density functional theory (DFT) and wave-function-in-DFT type for reaction energies and barriers. We show how the embedded calculations are accelerated in comparison to the corresponding supersystem calculations for realistic example reactions, using a new implementation of domain-based local pair natural orbital coupled cluster with single, double, and perturbative triple excitations [DLPNO-CCSD(T)]. The embedded calculations yield results within an error margin below 4 kJ mol for the reaction barrier and energy when compared to the supersystem calculation. The calculations can be executed in a user-friendly, black-box-like fashion with minimal manual input.
Download full-text PDF |
Source |
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http://dx.doi.org/10.1021/acs.jctc.0c00104 | DOI Listing |
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