An important task in the analysis of graphs is separating nodes into densely connected groups with little interaction between each other. Prominent methods here include flow based graph cutting procedures as well as statistical network modeling approaches. However, adequately accounting for this, the so-called community structure, in complex networks remains a major challenge. We present a novel generic Bayesian probabilistic model for graph cutting in which we derive an analytical solution to the marginalization of nuisance parameters under constraints enforcing community structure. As a part of the solution a large scale approximation for integrals involving multiple incomplete gamma functions is derived. Our multiple cluster solution presents a generic tool for Bayesian inference on Poisson weighted graphs across different domains. Applied on three real world social networks as well as three image segmentation problems our approach shows on par or better performance to existing spectral graph cutting and community detection methods, while learning the underlying parameter space. The developed procedure provides a principled statistical framework for graph cutting and the Bayesian Cut source code provided enables easy adoption of the procedure as an alternative to existing graph cutting methods.
Download full-text PDF |
Source |
---|---|
http://dx.doi.org/10.1109/TPAMI.2020.2994396 | DOI Listing |
With the increasing availability of high-quality genome assemblies, pangenome graphs emerged as a new paradigm in the genomics field for identifying, encoding, and presenting genomic variation at both population and species levels. However, it remains challenging to truly dissect and interpret pangenome graphs via biologically informative visualization. To facilitate better exploration and understanding of pangenome graphs towards novel biological insights, here we present a web-based interactive Visualization and interpretation framework for linear-Reference-projected Pangenome Graphs (VRPG).
View Article and Find Full Text PDFAdv Mater
December 2024
Department of Materials Science and Engineering, Korea University, Seoul, 02841, Republic of Korea.
Graph theory has been widely used to quantitatively analyze complex networks of molecules, materials, and cells. Analyzing the dynamic complex structure of extracellular matrix can predict cell-material interactions but has not yet been demonstrated. In this study, graph theory-based mathematical modeling of RGD ligand graph inter-relation is demonstrated by differentially cutting off RGD-to-RGD interlinkages with flexibly conjugated magnetic nanobars (MNBs) with tunable aspect ratio.
View Article and Find Full Text PDFCommun Med (Lond)
December 2024
Department of Hematology, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Background: The proportion of residual leukemic blasts after chemotherapy assessed by multiparameter flow cytometry, is an important prognostic factor for the risk of relapse and overall survival in acute myeloid leukemia (AML). This measurable residual disease (MRD) is used in clinical trials to stratify patients for more or less intensive consolidation therapy. However, an objective and reproducible analysis method to assess MRD status from flow cytometry data is lacking, yet is highly anticipated for broader implementation of MRD testing.
View Article and Find Full Text PDFSci Prog
January 2024
Department of Mathematics, School of Advanced Sciences, Vellore Institute of Technology, Vellore, Tamil Nadu, India.
Fuzzy graphs (FGs) contain dual-nature characteristics that may be extended to intuitionistic fuzzy graphs. These FGs are better at capturing ambiguity in situations in reality involving decision-making than FGs. In this paper, we address decision-making problems based on intuitionistic fuzzy preference relations (IFPRs) by utilizing Signless Laplacian energy (S), intuitionistic fuzzy weighted averaging (IFWA), and intuitionistic fuzzy weighted averaging geometric (IFWAG).
View Article and Find Full Text PDFPeerJ Comput Sci
November 2024
Data Science Laboratory/Data Science Department/Faculty of Information Technology, Industrial University of Ho Chi Minh City, Ho Chi Minh, Vietnam.
Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!