The framework effect of H-mordenite (H-MOR) zeolite on monomolecular dehydration of ethanol to ethylene has been simulated based on density functional theory. It is indicated that both the reaction mechanism and the activation energy barriers are significantly affected by the pore-confinement effect. In the 12-membered ring (12-MR), the energy barriers of the stepwise mechanism and the concerted mechanism are 35.0 and 42.4 kcal mol, respectively, suggesting that ethylene can be competitively formed through both pathways. While in the 8-membered ring (8-MR), the barrier of the concerted mechanism is 43.4 kcal mol, which is much lower than that of the stepwise mechanism with the ethoxy intermediate formation barrier of 53.7 kcal mol. Furthermore, the water molecule acts as the intermediate to stabilize the transition states (TSs) for both stepwise and concerted mechanisms and helps to transport protons during the reaction.
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http://dx.doi.org/10.1021/acsomega.9b03984 | DOI Listing |
J Comput Chem
January 2025
Department of Chemistry, Dr. Harisingh Gour Vishwavidyalaya, (A Central University), Sagar, India.
We report a direct application of the molecular tailoring approach-based (MTA-based) method to calculate the individual hydrogen bond (HB) energy in molecular crystal. For this purpose, molecular crystals of nitromalonamide (NMA) and salicylic acid (SA) were taken as test cases. Notably, doing a correlated computation using a large molecular crystal structure is difficult.
View Article and Find Full Text PDFBioorg Chem
December 2024
Institute of Geriatrics, The 2nd Medical Center, China National Clinical Research Center for Geriatric Disease, Chinese People's Liberation Army General Hospital, Beijing, China. Electronic address:
Background: Hederagenin (HG), derived from ivy seeds, is known to offer protection against Alzheimer's disease (AD). However, the specific molecular pathways through which it counters ferroptosis-induced neurotoxicity are not fully elucidated. This investigation seeks to delineate the processes by which HG mitigates neurotoxic effects in HT22 cells subjected to glutamate (Glu)-induced ferroptosis.
View Article and Find Full Text PDFJ Am Chem Soc
January 2025
School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, West Bengal 700032, India.
Designing catalysts for the selective reduction of CO, resulting in products having commercial value, is an important area of contemporary research. Several molecular catalysts have been reported to facilitate the reduction of CO (both electrochemical and photochemical) to yield 2e/2H electron-reduced products, CO and HCOOH, and selective reduction of CO beyond 2e/2H is rare. This is partly because the factors that control the selectivity of CO reduction beyond 2e are not yet understood.
View Article and Find Full Text PDFSci Rep
January 2025
Department of Biotechnology Engineering, NITTE (Deemed to be University), NMAM Institute of Technology, 574110, Karnataka, India.
Endophytes from medicinal plants are potential biocontrol agents against Fusarium oxysporum f. sp. cubense (Foc), which is the causative fungus of banana wilt disease.
View Article and Find Full Text PDFJ Chem Theory Comput
January 2025
Exscientia, Schrödinger Building, Oxford Science Park, Oxford OX4 4GE, U.K.
The development of machine-learning (ML) potentials offers significant accuracy improvements compared to molecular mechanics (MM) because of the inclusion of quantum-mechanical effects in molecular interactions. However, ML simulations are several times more computationally demanding than MM simulations, so there is a trade-off between speed and accuracy. One possible compromise are hybrid machine learning/molecular mechanics (ML/MM) approaches with mechanical embedding that treat the intramolecular interactions of the ligand at the ML level and the protein-ligand interactions at the MM level.
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