A PHP Error was encountered

Severity: Warning

Message: file_get_contents(https://...@pubfacts.com&api_key=b8daa3ad693db53b1410957c26c9a51b4908&a=1): Failed to open stream: HTTP request failed! HTTP/1.1 429 Too Many Requests

Filename: helpers/my_audit_helper.php

Line Number: 176

Backtrace:

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 176
Function: file_get_contents

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 250
Function: simplexml_load_file_from_url

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 3122
Function: getPubMedXML

File: /var/www/html/application/controllers/Detail.php
Line: 575
Function: pubMedSearch_Global

File: /var/www/html/application/controllers/Detail.php
Line: 489
Function: pubMedGetRelatedKeyword

File: /var/www/html/index.php
Line: 316
Function: require_once

sp. nov., a marine bacterium isolated from intertidal sand of the Yellow Sea. | LitMetric

sp. nov., a marine bacterium isolated from intertidal sand of the Yellow Sea.

Int J Syst Evol Microbiol

Department of Pathogenic Biology, Jining Medical University, Jining 272067, Shandong, PR China.

Published: May 2020

AI Article Synopsis

  • A new rod-shaped, Gram-negative bacterium named strain RZ05 was isolated from sand in the intertidal zone of the Yellow Sea in China, showing significant genetic similarity to known strains.
  • This strain grows best at temperatures around 30°C, at a neutral pH of 7.0, and with 2% salt concentration, while exhibiting aerobic behavior, positive oxidase and catalase reactions, and motility via gliding.
  • The bacterium has a unique polar lipid profile, a genome size of 4.65 Mbp with a specific G+C content, and is proposed as a novel species, designated as sp. nov. with the type strain RZ05.

Article Abstract

A novel rod-shaped and Gram-stain-negative bacterium, designated strain RZ05, was isolated from a sand sample collected from the intertidal zone of the Yellow Sea, PR China. Results of phylogenetic analysis based on 16S rRNA gene sequences revealed that strain RZ05 clusters within the genus , a member of the family , and has the highest sequence similarity to KCTC 22021 (97.8 %), followed by KCTC 52191 (97.2 %). Cells of this strain were observed to be aerobic, oxidase- and catalase-positive, motile by gliding and formed yellow colonies. Growth occurred at 7-40 °C (optimum, 30 °C), at pH 6.5-9.5 (optimum, pH 7.0) and with 0.5-6 % (optimum, 2 %) NaCl. Its polar lipid profile included phosphatidylethanolamine, two unidentified glycolipids, one unidentified aminolipid and four unidentified lipids. The major cellular fatty acids were iso-C, iso-C G, iso-C 3-OH, iso-C 3-OH, iso-C 3-OH, summed feature 9 (10-methyl C/iso-C ω9) and summed feature 3 (iso-C 2-OH/C ω7/C ω6). The only respiratory quinone was menaquinone 6 (MK-6). The genome of strain RZ05 was 4.65 Mbp with a G+C content of 38.9 mol%. The average nucleotide identity and DNA-DNA hybridization values between strain RZ05 and its most closely related type strain KCTC 22021 were 80.3 and 26.3  %, respectively. The results of phylogenetic, phenotypic and chemotaxonomic analyses indicated that strain RZ05 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is RZ05 (=KCTC 62834=MCCC 1K03617).

Download full-text PDF

Source
http://dx.doi.org/10.1099/ijsem.0.004206DOI Listing

Publication Analysis

Top Keywords

strain rz05
24
iso-c 3-oh
12
yellow sea
8
strain
8
kctc 22021
8
iso-c iso-c
8
3-oh iso-c
8
summed feature
8
type strain
8
rz05
6

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!