List mode proton imaging relies on accurate reconstruction of the proton most likely path (MLP) through the patient. This typically requires two sets of position sensitive detector systems, one upstream (front) and one downstream (rear) of the patient. However, for a clinical implementation it can be preferable to omit the front trackers (single-sided proton imaging). For such a system, the MLP can be computed from information available through the beam delivery system and the remaining rear tracker set. In this work, we use Monte Carlo simulations to compare a conventional double-sided (using both front and rear detector systems) with a single-sided system (only rear detector system) by evaluating the spatial resolution of proton radiographs (pRad) and proton CT images (pCT) acquired with these set-ups. Both the pencil beam spot size, as well as the spacing between spots was also adjusted to identify the impact of these beam parameters on the image quality. Relying only on the pencil beam central position for computing the MLP resulted in severe image artifacts both in pRad and pCT. Using the recently extended-MLP formalism that incorporate pencil beam uncertainty removed these image artifacts. However, using a more focused pencil beam with this algorithm induced image artifacts when the spot spacing was the same as the beam spot size. The spatial resolution tested with a sharp edge gradient technique was reduced by 40% for single-sided (MTF = 3.0 lp/cm) compared to double-sided (MTF = 4.9 lp/cm) pRad with ideal tracking detectors. Using realistic trackers the difference decreased to 30%, with MTF of 4.0 lp/cm for the realistic double-sided and 2.7 lp/cm for the realistic single-sided setup. When studying an anthropomorphic paediatric head phantom both single- and double-sided set-ups performed similarly where the difference in water equivalent thickness (WET) between the two set-ups were less than 0.01 mm in homogeneous areas of the head. Larger discrepancies between the two set-ups were visible in high density gradients like the facial structures. A complete CT reconstruction of a Catphan[Formula: see text] module was performed. Assuming ideal detectors, the obtained spatial resolution was 5.1 lp/cm for double-sided and 3.8 lp/cm for the single-sided setup. Double- and single-sided pRad with realistic tracker properties returned a spatial resolution of 3.8 lp/cm and 3.2 lp/cm, respectively. Future studies should investigate the development of dedicated reconstruction algorithms targeted for single-sided particle imaging.
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Anal Methods
January 2025
International Research Centre for Nano Handling and Manufacturing of China, Changchun University of Science and Technology, Changchun 130022, China.
Atomic force microscopy (AFM) is widely used for the imaging and characterization of biological cells because of its nanoscale spatial resolution and force resolution. However, in the previous studies, the inability to effectively detect the contractile work of cardiomyocytes and the 3D dynamic expressions of their contraction and relaxation behaviors posed significant challenges. Therefore, this work presents a method for the analysis of the contractile work of a single cardiomyocyte by AFM.
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January 2025
Functional Magnetic Resonance Imaging (FMRI) Core, NIH, National Institute of Mental Health, Bethesda, MD, United States.
The use of submillimeter resolution functional magnetic resonance imaging (fMRI) is increasing in popularity due to the prospect of studying human brain activation non-invasively at the scale of cortical layers and columns. This method, known as laminar fMRI, is inherently signal-to-noise ratio (SNR)-limited, especially at lower field strengths, with the dominant noise source being of thermal origin. Furthermore, laminar fMRI is challenged with signal displacements due to draining vein effects in conventional gradient-echo blood oxygen level-dependent (BOLD) imaging contrasts.
View Article and Find Full Text PDFData Brief
February 2025
Tecnológico Nacional de México/Instituto Tecnológico de Culiacán, División de Estudios de Posgrado e Investigación, Juan de Dios Batíz 310. Col. Guadalupe, 80220 Culiacán, Sinaloa, Mexico.
A dataset of aerial photographs acquired with an Unmanned Aerial Vehicle (UAV) DJI Phantom 4 Pro is presented for monitoring a cherry tomato ( var. ) crop in Navolato, Mexico. Seven photogrammetric flights were carried out to assess the plant growth using a Mapir Survey 3W multispectral camera.
View Article and Find Full Text PDFBMC Genomics
January 2025
UCLA Technology Center for Genomics & Bioinformatics, Department of Pathology & Laboratory Medicine, 650 Charles E Young Dr. South, Los Angeles, CA, 90095, USA.
Spatial transcriptomics technology enables the mapping of gene expression within tissues, allowing researchers to visualize the spatial distribution of RNA molecules and gain insights into cellular organization, interactions, and functions in their native environments. A variety of spatial technologies are now commercially available, each offering distinct technical parameters such as cellular resolution, detection sensitivity, gene coverage, and throughput. This wide range of options can make it challenges or create confusion for researchers to select the most appropriate platform for their specific research objectives.
View Article and Find Full Text PDFNat Rev Mol Cell Biol
January 2025
Oncode Institute, Utrecht, the Netherlands.
Translation is one of the most energy-intensive processes in a cell and, accordingly, is tightly regulated. Genome-wide methods to measure translation and the translatome and to study the complex regulation of protein synthesis have enabled unprecedented characterization of this crucial step of gene expression. However, technological limitations have hampered our understanding of translation control in multicellular tissues, rare cell types and dynamic cellular processes.
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