Background: Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) may provide biomarkers of the outcome of locally-advanced cervical carcinoma (LACC). There is, however, no agreement on how DCE-MR recordings should be analyzed. Previously, we have analyzed DCE-MRI data of LACC using non-model-based strategies. In the current study, we analyzed DCE-MRI data of LACC using the Tofts pharmacokinetic model, and the biomarkers derived from this analysis were compared with those derived from the non-model-based analyses.
Methods: Eighty LACC patients given cisplatin-based chemoradiotherapy with curative intent were included in the study. Treatment outcome was recorded as disease-free survival (DFS) and overall survival (OS). DCE-MRI series were analyzed voxelwise to produce K and v frequency distributions, and ROC analysis was used to identify the parameters of the frequency distributions having the greatest potential as biomarkers. The prognostic power of these parameters was compared with that of the non-model-based parameters LETV (low-enhancing tumor volume) and TVIS (tumor volume with increasing signal).
Results: Poor DFS and OS were associated with low values of K, whereas there was no association between treatment outcome and v. The K parameters having the greatest prognostic value were p35-K (the K value at the 35 percentile of a frequency distribution) and RV-K (the tumor subvolume with K values below 0.13 min). Multivariate analysis including clinical parameters and p35-K or RV-K revealed that RV-K was the only independent prognostic factor of DFS and OS. There were significant correlations between RV-K and LETV and between RV-K and TVIS, and the prognostic power of RV-K was similar to that of LETV and TVIS.
Conclusions: Biomarkers of the outcome of LACC can be provided by analyzing DCE-MRI series using the Tofts pharmacokinetic model. However, these biomarkers do not appear to have greater prognostic value than biomarkers determined by non-model-based analyses.
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http://dx.doi.org/10.1186/s13014-020-01526-2 | DOI Listing |
PLoS One
September 2022
Department of Biological Sciences, University of Embu, Embu, Kenya.
Crotalaria is a plant genus that is found all over the world, with over 700 species of herbs and shrubs. The species are potential alternative food and industrial crops due to their adaptability to different environments. Currently, information on the genetic diversity and population structure of these species is scanty.
View Article and Find Full Text PDFHeredity (Edinb)
August 2022
Institute of Zoology, Zoological Society of London, London, NW1 4RY, UK.
Model-based (likelihood and Bayesian) and non-model-based (PCA and K-means clustering) methods were developed to identify populations and assign individuals to the identified populations using marker genotype data. Model-based methods are favoured because they are based on a probabilistic model of population genetics with biologically meaningful parameters and thus produce results that are easily interpretable and applicable. Furthermore, they often yield more accurate structure inferences than non-model-based methods.
View Article and Find Full Text PDFRadiat Oncol
April 2020
Department of Radiation Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway.
Background: Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) may provide biomarkers of the outcome of locally-advanced cervical carcinoma (LACC). There is, however, no agreement on how DCE-MR recordings should be analyzed. Previously, we have analyzed DCE-MRI data of LACC using non-model-based strategies.
View Article and Find Full Text PDFPLoS One
March 2020
University at Albany, State University of New York, School of Public Health, Department of Biomedical Sciences, Albany, NY, United States of America.
The relationship between deforestation and malaria in Amazonian Brazil is complex, and a deeper understanding of this relationship is required to inform effective control measures in this region. Here, we are particularly interested in characterizing the impact of land use and land cover change on the genetics of the major regional vector of malaria, Nyssorhynchus darlingi (Root). We used nextera-tagmented, Reductively Amplified DNA (nextRAD) genotyping-by-sequencing to genotype 164 Ny.
View Article and Find Full Text PDFParasit Vectors
May 2019
Biotechnology Institute (IBTEC) & Biosciences Institute at Botucatu (IBB), Sao Paulo State University (UNESP), Sao Paulo, Brazil.
Background: In the Amazon Basin, Nyssorhynchus (Anopheles) darlingi is the most aggressive and effective malaria vector. In endemic areas, behavioral aspects of anopheline vectors such as host preference, biting time and resting location post blood meal have a key impact on malaria transmission dynamics and vector control interventions. Nyssorhynchus darlingi presents a range of feeding and resting behaviors throughout its broad distribution.
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