Leaves, flowers, fruits and stems (44 sample groups) were collected from mature Camptotheca acuminate during 2017.3-2018.3 and classified by ultra-high performance liquid chromatography coupled with quadrupole-time of flight-mass spectrometry based metabolomics. One hundred metabolites including forty-seven alkaloids, fifteen terpenes, thirty-two polyphenols and six other metabolites were rapidly identified through the in-house database alignment at first glance. Thirty-three alkaloids classified into five groups including camptothecin group (CG1-13), pumiloside group (PG1-5), strictosidinic acid group (SG1-3), vincosamide group (VG1-7), and a new hybrid group, vincosamide-camptothecin group (VC1-5) were mined and further characterized by MS/MS analyses. The identification of two untapped biosynthetic precursors, 2-hydroxypumiloside (PG2) and 16‑hydroxy‑15, 16-dihydrocamptothecoside (CG3), along with sixteen new alkaloids enables us for a better understanding of camptothecin biogenetic reasoning. The underlying enzymes involved in camptothecin biosynthesis were also proposed according to the guiding metabolic map, thus purposefully mining of enzymes involved in the downstream biosynthetic pathway of camptothecin could be initiated with the help of this map.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.chroma.2020.461036DOI Listing

Publication Analysis

Top Keywords

identification untapped
8
camptotheca acuminate
8
ultra-high performance
8
performance liquid
8
liquid chromatography
8
chromatography coupled
8
coupled quadrupole-time
8
quadrupole-time flight-mass
8
flight-mass spectrometry
8
enzymes involved
8

Similar Publications

Unveiling novel antimicrobial peptides from the ruminant gastrointestinal microbiomes: A deep learning-driven approach yields an anti-MRSA candidate.

J Adv Res

January 2025

Ruminant Nutrition and Feed Engineering Technology Research Center, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China; Laboratory of Gastrointestinal Microbiology, Jiangsu Key Laboratory of Gastrointestinal Nutrition and Animal Health, National Center for International Research on Animal Gut Nutrition, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China. Electronic address:

Introduction: Antimicrobial peptides (AMPs) present a promising avenue to combat the growing threat of antibiotic resistance. The ruminant gastrointestinal microbiome serves as a unique ecosystem that offers untapped potential for AMP discovery.

Objectives: The aims of this study are to develop an effective methodology for the identification of novel AMPs from ruminant gastrointestinal microbiomes, followed by evaluating their antimicrobial efficacy and elucidating the mechanisms underlying their activity.

View Article and Find Full Text PDF

Screening and identification of antimicrobial peptides from the gut microbiome of cockroach Blattella germanica.

Microbiome

December 2024

MOE Key Laboratory of Bio-Intelligent Manufacturing, School of Bioengineering, Dalian University of Technology, Dalian, Liaoning, 116024, China.

Article Synopsis
  • * Researchers identified and validated an AMP, named AMP1, which has broad-spectrum antibacterial activity and minimal toxicity to human cells, showing potential as a safer alternative to traditional antibiotics.
  • * The study emphasizes the effective screening of natural AMPs and highlights AMP1's ability to affect bacterial cell wall synthesis and promote wound healing, suggesting it could be a viable option for clinical use.
View Article and Find Full Text PDF

Investigating the optimistic and therapeutic effects of wild grape: R. Parker.

Heliyon

December 2024

Integrated Molecular Plant Physiology Research, Department of Biology, University of Antwerp, 16 Antwerp, Belgium.

R. Parker is a wild grape traditionally used by indigenous people as a substitute for cultivated grapes. However, its therapeutic effects have not been extensively studied.

View Article and Find Full Text PDF

Culturomics- and metagenomics-based insights into the soil microbiome preservation and application for sustainable agriculture.

Front Microbiol

October 2024

Sustainable AgriFood Systems Division, Department for Sustainability, Casaccia Research Center, ENEA, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy.

Article Synopsis
  • Soil health is essential for food production, as microbiomes improve soil quality by breaking down contaminants, managing nutrient cycles, and helping plants cope with stress.
  • Microbiome solutions can be developed from both synthetic communities (engineered for specific tasks) and natural populations (which enhance local resilience), promoting sustainable agricultural practices.
  • Advancements in molecular techniques, like metagenomic sequencing and culturomics, allow us to better understand and preserve soil microbial diversity, which is vital for effective land management and conservation efforts.
View Article and Find Full Text PDF

Pangenome and pantranscriptome as the new reference for gene-family characterization: A case study of basic helix-loop-helix (bHLH) genes in barley.

Plant Commun

January 2025

Western Crop Genetic Alliance, Murdoch University, Murdoch, WA 6150, Australia; State Agricultural Biotechnology Centre (SABC), College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA 6150, Australia; Department of Primary Industry and Regional Development, Government of Western Australia, South Perth, WA 6155, Australia; College of Agriculture, Shandong Agricultural University, TaiAn, China. Electronic address:

Genome-wide identification and comparative gene-family analyses have commonly been performed to investigate species-specific evolution linked to various traits and molecular pathways. However, most previous studies have been limited to gene screening in a single reference genome, failing to account for the gene presence/absence variations (gPAVs) in a species. Here, we propose an innovative pangenome-based approach for gene-family analyses based on orthologous gene groups (OGGs).

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!