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Identifying BAP1 Mutations in Clear-Cell Renal Cell Carcinoma by CT Radiomics: Preliminary Findings. | LitMetric

Identifying BAP1 Mutations in Clear-Cell Renal Cell Carcinoma by CT Radiomics: Preliminary Findings.

Front Oncol

Department of Radiology, College of Medicine, The First Affiliated Hospital, Zhejiang University, Hangzhou, China.

Published: February 2020

AI Article Synopsis

  • The study investigates using CT radiomics to predict BRCA1-associated protein 1 mutation status in patients with clear-cell renal cell carcinoma (ccRCC) using data from 54 patients.
  • Researchers extracted texture features from tumor images and applied data augmentation for the mutation group to enhance prediction stability.
  • The Random Forest classification model achieved an accuracy of 83%, with other metrics indicating it is a promising method for predicting mutation status in ccRCC patients.

Article Abstract

To evaluate the potential application of computed tomography (CT) radiomics in the prediction of BRCA1-associated protein 1 () mutation status in patients with clear-cell renal cell carcinoma (ccRCC). In this retrospective study, clinical and CT imaging data of 54 patients were retrieved from The Cancer Genome Atlas-Kidney Renal Clear Cell Carcinoma database. Among these, 45 patients had wild-type and nine patients had mutation. The texture features of tumor images were extracted using the Matlab-based IBEX package. To produce class-balanced data and improve the stability of prediction, we performed data augmentation for the mutation group during cross validation. A model to predict mutation status was constructed using Random Forest Classification algorithms, and was evaluated using leave-one-out-cross-validation. Random Forest model of predict mutation status had an accuracy of 0.83, sensitivity of 0.72, specificity of 0.87, precision of 0.65, AUC of 0.77, F-score of 0.68. CT radiomics is a potential and feasible method for predicting mutation status in patients with ccRCC.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7058626PMC
http://dx.doi.org/10.3389/fonc.2020.00279DOI Listing

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