We employ and combine a number of recent developments in vibrational structure methods to push their current size limitations toward molecules with tens of modes and showcase their availability for the maleimide molecule. In particular, we assess the use of different rectilinear vibrational coordinates, namely, normal coordinates, hybrid optimized and localized coordinates, and flexible adaptation of local coordinates of nuclei coordinates. These different coordinate parameterizations are employed in conjunction with the adaptive density-guided approach to generate potential energy surfaces (PESs). A screening procedure is furthermore introduced, which provides estimates of the importance of individual terms in the PES, resulting in significant reductions in the computational cost of the PES construction. We find that all three sets of coordinates provide approximately the same level of accuracy in vibrational structure calculations and report fundamental excitation energies with a mean absolute deviation of less than 12 cm when compared to experimental data. We expect that similar accuracy in vibrational structure calculations can be achieved for molecules of larger size using the proposed procedures.
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http://dx.doi.org/10.1021/acs.jpca.9b11915 | DOI Listing |
ACS Nano
January 2025
Department of Chemistry, University of California Berkeley, Berkeley, California 94720, United States.
Understanding charge transport in semiconductor quantum dot (QD) assemblies is important for developing the next generation of solar cells and light-harvesting devices based on QD technology. One of the key factors that governs the transport in such systems is related to the hybridization between the QDs. Recent experiments have successfully synthesized QD molecules, arrays, and assemblies by directly fusing the QDs, with enhanced hybridization leading to high carrier mobilities and coherent band-like electronic transport.
View Article and Find Full Text PDFR Soc Open Sci
January 2025
WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, UK.
Chronic myeloid leukaemia (CML) is primarily treated using imatinib mesylate, a tyrosine kinase inhibitor (TKI) targeting the BCR::ABL1 oncoprotein. However, the development of drug resistance and adverse side effects necessitate the exploration of alternative therapeutic agents. This study presents the synthesis and characterization of a novel imatinib analogue, 3-chloro--(2-methyl-5-((4-(pyridin-2-yl)pyrimidin-2-yl)amino)phenyl)benzamide (PAPP1).
View Article and Find Full Text PDFSpectrochim Acta A Mol Biomol Spectrosc
January 2025
School of Food Science and Technology, Jiangnan University, Wuxi, PR China.
This study investigates camel milk protein structural dynamics during digestion using Fourier Transform Infrared (FTIR) spectroscopy and Two-Dimensional Infrared (2D-IR) homo-correlation and hetero-correlation analysis. The synchronous 2DIR homo-correlation map reveals that NH bending and C-N stretching vibrations (amide II) are sensitive to digestion, indicating significant impacts on secondary structures. The asynchronous 2DIR homo-correlation indicates a stepwise process, where initial disruptions in NH interactions precede changes in CO stretching vibrations (amide I), highlighting the sequence of structural alterations during protein unfolding and degradation.
View Article and Find Full Text PDFPhys Rev Lett
December 2024
Tel Aviv University, University of Pennsylvania, Department of Chemistry, Philadelphia, Pennsylvania 19104, USA and School of Chemistry, Tel Aviv 69978, Israel.
Chiral phonons have been proposed to be involved in various physical phenomena, yet the chirality of molecular normal modes has not been well defined mathematically. Here we examine two approaches for assigning and quantifying the chirality of molecular normal modes in double-helical molecular wires with various levels of twist. First, associating with each normal mode a structure obtained by imposing the corresponding motion on a common origin, we apply the continuous chirality measure (CCM) to quantitatively assess the relationship between the chirality-weighted normal mode spectrum and the chirality of the underlying molecular structure.
View Article and Find Full Text PDFJ Acoust Soc Am
January 2025
Urban Construction Center of Lucheng District of Wenzhou, Wenzhou, 325000, China.
The identification of vibration and reconstruction of sound fields of plate structures are important for understanding the vibroacoustic characteristics of complex structures. This paper presents a data-physics driven (DPD) model integrated with transfer learning (DPDT) for high-precision identification and reconstruction of vibration and noise radiation of plate structures. The model combines the Kirchhoff-Helmholtz integral equation with convolutional neural networks, leveraging physical information to reduce the need for extensive data.
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