Isolation of sp. nov., from liver of diseased catfish ().

Heliyon

Laboratory of Aquatic Biomedicine, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul National University, Seoul 08826, Republic of Korea.

Published: February 2020

Yellow-pigmented, circular bacteria (strain SNU WT7) were isolated from the liver of moribund eastern catfish (). Our study focused on the taxonomic description of SNU WT7 using phylogenetic, phenotypic, and chemotaxonomic analyses. The 16S rRNA gene sequence of the SNU WT7 strain was highly similar to that of H38 (97.29% similarity), followed by P2K6 (97.22% similarity), while other species exhibited similarity values of less than 97.0%. The genome of strain SNU WT7 displayed average nucleotide identity and genome-to-genome distance values of 72.35% and 22.0%, respectively, which clearly indicated that the novel species was distant from the other species, with its closest relative being H38. Furthermore, the phenotypic characteristics, including acid production from glucose, D-fructose, lactose, and maltose, of strain SNU WT 7 differed from those of H38. The major polar lipid of the strain was phosphatidylethanolamine, and several unidentified aminolipids and lipids were also present. Similar to other species, the quinone system was composed mainly of MK-6. The genome of SNU WT7 is 2,690,367 bp with a G + C content of 43.6%. Taken together, our data indicate that the isolate SNU WT7 represents a novel species of the genus . Thus, we present the name sp. nov. for the novel type strain SNU WT7 (KCTC 72626, JCM 33707).

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7036476PMC
http://dx.doi.org/10.1016/j.heliyon.2020.e03454DOI Listing

Publication Analysis

Top Keywords

snu wt7
28
strain snu
16
snu
8
novel species
8
wt7
7
strain
6
species
5
isolation nov
4
nov liver
4
liver diseased
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!