DFT calculations and microkinetic simulations are applied to the reproduction of previously reported experimental results on the evolution of product concentration versus time in the condensation reaction of -butylamine and benzaldehyde. The mechanism is complicated by the role played by water impurities as proton shuttles. Several functionals and other approaches are tested, yet good agreement is only achieved upon the usage of an adjustment consisting of a directed biasing of the computed DFT free energies.
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http://dx.doi.org/10.1021/acs.orglett.0c00367 | DOI Listing |
Avian Pathol
January 2025
Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands.
infections can be experimentally reproduced after oral inoculation. Co-infections of with other avian pathogens might increase the proportion of broilers with infections. The aim of the study was to examine via which infection route is capable of causing infections and which co-infections exacerbate infections.
View Article and Find Full Text PDFComput Biol Med
January 2025
Department of Clinical Molecular Biology, Institute of Clinical Medicine, University of Oslo, Lørenskog, Norway; Medical Division (EpiGen), Akershus University Hospital, Lørenskog, Norway. Electronic address:
Since the invention of next-generation sequencing, new methods have been developed to understand the regulation of gene expression through epigenetic markers. Among these, CUT&Tag (Cleavage Under Targets and Tagmentation) analysis has emerged as an efficient epigenomic profiling technique with low input requirements, high sensitivity, and low background signals. Although wet-lab techniques are available, data analysis remains challenging for scientists without expert-level computational skills.
View Article and Find Full Text PDFDevelopment
January 2025
Department of Plant and Microbial Biology, University of Zurich, Zollikerstrasse 107, CH8008, Zurich, Switzerland.
Cell division is a fundamental process shared across diverse life forms, from yeast to humans and plants. Multicellular organisms reproduce through the formation of specialized types of cells, the gametes, which at maturity enter a quiescent state that can last decades. At the point of fertilization, signalling lifts the quiescent state and triggers cell cycle reactivation.
View Article and Find Full Text PDFMacromolecules
January 2025
Department of Biochemistry, Virginia Tech, Blacksburg, Virginia 24061, United States.
The environmental and economic challenges posed by the widespread use and disposal of plastics, particularly poly(ethylene terephthalate) (PET), require innovative solutions to mitigate their impact. Such mitigation begins with understanding physical properties of the polymer that could enable new recycling technologies. Although molecular simulations have provided valuable insights into PET interactions with various PET hydrolases, current nonpolarizable force fields neglect the electronic polarization effects inherent to PET interactions.
View Article and Find Full Text PDFACS Nano
January 2025
Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
Carbon dioxide capture underpins an important range of technologies that can help to mitigate climate change. Improved carbon capture technologies that are driven by electrochemistry are under active development, and it was recently found that supercapacitor energy storage devices can reversibly capture and release carbon dioxide. So-called supercapacitive swing adsorption (SSA) has several advantages over traditional carbon dioxide capture technologies such as lower energy consumption and the use of nontoxic materials.
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