Using the in silico experimental evolution platform Aevol, we have tested the existence of a by evolving populations of digital organisms under environmental conditions in which simple organisms can very well thrive and reproduce. We observed that in most simulations, organisms become complex although such organisms are a lot less fit than simple ones and have no robustness or evolvability advantage. This excludes selection from the set of possible explanations for the evolution of complexity. However, complementary experiments showed that selection is nevertheless necessary for complexity to evolve, also excluding non-selective effects. Analyzing the long-term fate of complex organisms, we showed that complex organisms almost never switch back to simplicity despite the potential fitness benefit. On the contrary, they consistently accumulate complexity in the long term, meanwhile slowly increasing their fitness but never overtaking that of simple organisms. This suggests the existence of a complexity ratchet powered by negative epistasis: Mutations leading to simple solutions, which are favorable at the beginning of the simulation, become deleterious after other mutations-leading to complex solutions-have been fixed. This also suggests that this complexity ratchet cannot be beaten by selection, but that it can be overthrown by robustness because of the constraints it imposes on the coding capacity of the genome.
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Phys Rev E
November 2024
West Los Angeles College, Science Division, 9000 Overland Ave, Culver City, California 90230, USA.
The thermodynamic relations for a Brownian particle moving in a discrete ratchet potential coupled with quadratically decreasing temperature are explored as a function of time. We show that this thermal arrangement leads to a higher velocity (lower efficiency) compared to a Brownian particle operating between hot and cold baths, and a heat bath where the temperature linearly decreases along with the reaction coordinate. The results obtained in this study indicate that if the goal is to design a fast-moving motor, the quadratic thermal arrangement is more advantageous than the other two thermal arrangements.
View Article and Find Full Text PDFEntropy (Basel)
October 2024
Complexity Sciences Center and Department of Physics, University of California at Davis, One Shields Avenue, Davis, CA 95616, USA.
We identify macroscopic functioning arising during a thermodynamic system's typical and atypical behaviors, thereby describing system operations over the entire set of fluctuations. We show how to use the information processing second law to determine functionality for atypical realizations and how to calculate the probability of distinct modalities occurring via the large-deviation rate function, extended to include highly correlated, memoryful environments and systems. Altogether, the results complete a theory of functional fluctuations for complex thermodynamic nanoscale systems operating over finite periods.
View Article and Find Full Text PDFNat Commun
October 2024
Department of Electrical Engineering and Computer Science, University of California, Berkeley, California, USA.
Materials (Basel)
September 2024
Department of Mechanical Engineering, McMaster University, Hamilton, ON L8S 4L7, Canada.
Ratcheting analysis for cantilever beams subjected to the thermomechanical loads is presented using the finite element method. The cantilever beam is constrained along the vertical direction, and plane stress conditions are assumed according to the bilinear isotropic hardening model. Two points are considered to obtain areas of ratcheting by using linear extrapolation.
View Article and Find Full Text PDFProc Natl Acad Sci U S A
September 2024
Department of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104.
Developmental biology-inspired strategies for tissue-building have extraordinary promise for regenerative medicine, spurring interest in the relationship between cell biophysical properties and morphological transitions. However, mapping gene or protein expression data to cell biophysical properties to physical morphogenesis remains challenging with current techniques. Here, we present ultiplexed dhesion and raction of ells at igh ield (MATCHY).
View Article and Find Full Text PDFEnter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!